Resource

Id DNase-seq/ENCSR857AEBcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR857AEB [biosample_summary="Homo sapiens large intestine tissue male embryo (108 days)"]
Description
Labels
  • accession: ENCSR857AEB
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000059/
  • biosample_summary: Homo sapiens large intestine tissue male embryo (108 days)
  • date_created: 2015-09-16T21:42:20.549161+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR857AEB
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (108 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR857AEB float

DNase-seq_ENCSR857AEB
DNase-seq ENCSR857AEB [biosample_summary="Homo sapiens large intestine tissue male embryo (108 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR857AEB [5, 3.05e+04]
n
50,821,907
mean
274
sd
486

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 508219071.58% 338128
chr1 4724243 1.90% 31436
chr2 4155689 1.72% 27648
chr3 3307973 1.67% 22011
chr4 2772552 1.46% 18432
chr5 2821975 1.55% 18772
chr6 3037878 1.78% 20219
chr7 2624291 1.65% 17447
chr8 2280727 1.57% 15179
chr9 2114499 1.53% 14075
chr10 2413684 1.80% 16064
chr11 2626953 1.94% 17489
chr12 2458191 1.84% 16344
chr13 1402546 1.23% 9332
chr14 1650740 1.54% 10966
chr15 1561390 1.53% 10391
chr16 1560363 1.73% 10385
chr17 1988105 2.39% 13235
chr18 1192483 1.48% 7932
chr19 1426432 2.43% 9495
chr20 1267563 1.97% 8439
chr21 603997 1.29% 4021
chr22 876838 1.73% 5842
chrX 1820196 1.17% 12097
chrY 132599 0.23% 877
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 338128 1 505 150.3 150
global segment-length histogram

Files

Filename Size md5
ENCFF276FKY.bed.gz 3.23 MB fbaa938e25380a32bc5474f8428193bf
ENCFF276FKY.tabix.bed.gz 2.78 MB 6a8a1ff6a9f09cafe9bce34835fc4954
ENCFF276FKY.tabix.bed.gz.tbi 808.95 KB 680037bc7d8c64b39df307d8326d69d4
genomic_resource.yaml 1.41 KB 4154cc03c24b6c50dd675d3da629bcdd
statistics/