Resource

Id DNase-seq/ENCSR850YHJcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR850YHJ [biosample_summary="Homo sapiens spleen tissue male adult (54 years)"]
Description
Labels
  • accession: ENCSR850YHJ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002106/
  • biosample_summary: Homo sapiens spleen tissue male adult (54 years)
  • date_created: 2016-12-27T20:38:03.954902+00:00
  • date_released: 2017-10-23
  • doi: 10.17989/ENCSR850YHJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (54 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR850YHJ float

DNase-seq_ENCSR850YHJ
DNase-seq ENCSR850YHJ [biosample_summary="Homo sapiens spleen tissue male adult (54 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR850YHJ [5, 8.11e+03]
n
60,046,107
mean
66
sd
44.1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 600461071.87% 399378
chr1 5169030 2.08% 34385
chr2 4977264 2.06% 33098
chr3 3289200 1.66% 21883
chr4 3073662 1.62% 20445
chr5 3091566 1.70% 20573
chr6 2750869 1.61% 18299
chr7 3356892 2.11% 22326
chr8 2488850 1.71% 16555
chr9 2617982 1.89% 17412
chr10 3179979 2.38% 21158
chr11 3415207 2.53% 22716
chr12 2597312 1.95% 17280
chr13 1491469 1.30% 9921
chr14 1960274 1.83% 13027
chr15 1859191 1.82% 12370
chr16 2294631 2.54% 15262
chr17 3068150 3.69% 20405
chr18 1233826 1.54% 8213
chr19 2013555 3.44% 13384
chr20 1904059 2.95% 12667
chr21 1005968 2.15% 6696
chr22 2005379 3.95% 13332
chrX 1108319 0.71% 7353
chrY 93473 0.16% 618
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 399378 2 450 150.35 150
global segment-length histogram

Files

Filename Size md5
ENCFF534XLO.bed.gz 3.62 MB 52605860b513bfbd85e5829da577ddb6
ENCFF534XLO.tabix.bed.gz 3.08 MB de265dc06df22b4cebd94a0514b152e4
ENCFF534XLO.tabix.bed.gz.tbi 646.73 KB b0142499964de2065a302e0ad005be82
genomic_resource.yaml 3.35 KB 16555301648bf260d0564a56974c47ee
statistics/