Resource
| Id | DNase-seq/ENCSR849WGE |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR849WGE [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (84 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (84 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF525DQO|/files/ENCFF525DQO/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.28. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR849WGE | float |
DNase-seq_ENCSR849WGE |
DNase-seq ENCSR849WGE [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (84 years)"]
|
 |
[0.0722, 10.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 9810994 | 0.30% | 53304 |
| chr1 | 956236 | 0.38% | 5173 |
| chr2 | 735440 | 0.30% | 4085 |
| chr3 | 554849 | 0.28% | 3022 |
| chr4 | 355145 | 0.19% | 1934 |
| chr5 | 484212 | 0.27% | 2676 |
| chr6 | 502555 | 0.29% | 2736 |
| chr7 | 455056 | 0.29% | 2520 |
| chr8 | 429375 | 0.30% | 2356 |
| chr9 | 435354 | 0.31% | 2390 |
| chr10 | 468538 | 0.35% | 2533 |
| chr11 | 551439 | 0.41% | 3012 |
| chr12 | 474043 | 0.36% | 2557 |
| chr13 | 180288 | 0.16% | 986 |
| chr14 | 322367 | 0.30% | 1737 |
| chr15 | 319827 | 0.31% | 1756 |
| chr16 | 390454 | 0.43% | 2084 |
| chr17 | 520983 | 0.63% | 2784 |
| chr18 | 161384 | 0.20% | 891 |
| chr19 | 555086 | 0.95% | 2824 |
| chr20 | 313405 | 0.49% | 1742 |
| chr21 | 113002 | 0.24% | 625 |
| chr22 | 280001 | 0.55% | 1526 |
| chrX | 242330 | 0.16% | 1303 |
| chrY | 9625 | 0.02% | 52 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 53304 | 1 | 820 | 184.06 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF100UJA.bed.gz | 584.1 KB | d30dcfac090b2dda4d993aecf86de910 |
| ENCFF100UJA.tabix.bed.gz | 529.68 KB | db4764c7549f07c60c6b8be74a665c71 |
| ENCFF100UJA.tabix.bed.gz.tbi | 256.85 KB | 717d6125d852b38bbcc7bcd2aa9996a5 |
| genomic_resource.yaml | 2.08 KB | 488b7479ad305f5c7eabb3129f5b8ce3 |
| statistics/ |