Resource

Id DNase-seq/ENCSR847RSJcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR847RSJ [biosample_summary="Homo sapiens lung tissue female embryo (96 days)"]
Description
Labels
  • accession: ENCSR847RSJ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002048/
  • biosample_summary: Homo sapiens lung tissue female embryo (96 days)
  • date_created: 2015-09-16T21:42:44.412396+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR847RSJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (96 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR847RSJ float

DNase-seq_ENCSR847RSJ
DNase-seq ENCSR847RSJ [biosample_summary="Homo sapiens lung tissue female embryo (96 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR847RSJ [0.19, 30.1]
n
15,056,080
mean
3.08
sd
3.08

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 150560800.47% 82713
chr1 1331156 0.53% 7267
chr2 1247650 0.52% 6868
chr3 1007304 0.51% 5550
chr4 791235 0.42% 4386
chr5 871008 0.48% 4822
chr6 923437 0.54% 5047
chr7 765144 0.48% 4272
chr8 712209 0.49% 3936
chr9 622842 0.45% 3392
chr10 760728 0.57% 4210
chr11 765222 0.57% 4195
chr12 738278 0.55% 4034
chr13 434075 0.38% 2409
chr14 463110 0.43% 2531
chr15 487725 0.48% 2679
chr16 449711 0.50% 2443
chr17 589066 0.71% 3219
chr18 354854 0.44% 1996
chr19 517086 0.88% 2675
chr20 389172 0.60% 2162
chr21 165357 0.35% 919
chr22 238538 0.47% 1315
chrX 431033 0.28% 2385
chrY 140 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 82713 1 760 182.03 180
global segment-length histogram

Files

Filename Size md5
ENCFF423WOR.bed.gz 884.42 KB 550aaeb5b14e05c28c2ea0a70b9e966a
ENCFF423WOR.tabix.bed.gz 793.08 KB 57e113f8ca36455d5bd7054806f3b44b
ENCFF423WOR.tabix.bed.gz.tbi 423.59 KB 43d29c8d424f666469d13236fa33a3bb
genomic_resource.yaml 1.82 KB 7047bea7eb24bb932d38ae235e29e566
statistics/