Resource
| Id | DNase-seq/ENCSR846VGZ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR846VGZ [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (90 or above years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF129OBE|/files/ENCFF129OBE/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.30. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR846VGZ | float |
DNase-seq_ENCSR846VGZ |
DNase-seq ENCSR846VGZ [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (90 or above years)"]
|
 |
[0.0626, 9.24] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 16259542 | 0.51% | 81795 |
| chr1 | 1475873 | 0.59% | 7464 |
| chr2 | 1395566 | 0.58% | 6934 |
| chr3 | 831785 | 0.42% | 4241 |
| chr4 | 595763 | 0.31% | 2866 |
| chr5 | 755773 | 0.42% | 3801 |
| chr6 | 621992 | 0.36% | 3189 |
| chr7 | 844324 | 0.53% | 4244 |
| chr8 | 704571 | 0.49% | 3580 |
| chr9 | 756109 | 0.55% | 3820 |
| chr10 | 906082 | 0.68% | 4505 |
| chr11 | 1023966 | 0.76% | 5110 |
| chr12 | 598296 | 0.45% | 3077 |
| chr13 | 336168 | 0.29% | 1658 |
| chr14 | 573588 | 0.54% | 2845 |
| chr15 | 585062 | 0.57% | 2993 |
| chr16 | 640905 | 0.71% | 3297 |
| chr17 | 901788 | 1.08% | 4616 |
| chr18 | 283215 | 0.35% | 1449 |
| chr19 | 672937 | 1.15% | 3403 |
| chr20 | 532139 | 0.83% | 2653 |
| chr21 | 262017 | 0.56% | 1292 |
| chr22 | 626177 | 1.23% | 3072 |
| chrX | 334716 | 0.21% | 1680 |
| chrY | 730 | <0.01% | 6 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 81795 | 1 | 1073 | 198.78 | 186 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF319VYE.bed.gz | 832.3 KB | bd71de671d7ba759d5f1380614d1953f |
| ENCFF319VYE.tabix.bed.gz | 773.69 KB | 2ab42fefc75c6aec5514b1aff53415bb |
| ENCFF319VYE.tabix.bed.gz.tbi | 222.15 KB | a1ca3810f44c490b8bf7cca2c37e3375 |
| genomic_resource.yaml | 2.13 KB | 1263d26fdc2729123e410b2b37f61605 |
| statistics/ |