Resource

Id DNase-seq/ENCSR840USWcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR840USW [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours"]
Description
Labels
  • accession: ENCSR840USW
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours
  • date_created: 2020-04-19T18:36:53.668821+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR840USW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR840USW float

DNase-seq_ENCSR840USW
DNase-seq ENCSR840USW [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-4 for 24 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR840USW [0.271, 83.3]
n
10,174,259
mean
8.2
sd
9.81

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 101742590.32% 56899
chr1 1023641 0.41% 5738
chr2 721018 0.30% 4053
chr3 563597 0.28% 3154
chr4 361553 0.19% 2010
chr5 460910 0.25% 2613
chr6 597590 0.35% 3321
chr7 457988 0.29% 2570
chr8 394238 0.27% 2230
chr9 431095 0.31% 2409
chr10 453892 0.34% 2558
chr11 515638 0.38% 2908
chr12 520727 0.39% 2902
chr13 204878 0.18% 1152
chr14 338343 0.32% 1891
chr15 338939 0.33% 1921
chr16 431003 0.48% 2390
chr17 593015 0.71% 3263
chr18 171008 0.21% 965
chr19 646421 1.10% 3486
chr20 289314 0.45% 1643
chr21 117622 0.25% 666
chr22 247669 0.49% 1401
chrX 283943 0.18% 1594
chrY 10217 0.02% 61
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 56899 7 710 178.81 180
global segment-length histogram

Files

Filename Size md5
ENCFF674DZH.bed.gz 621.0 KB 63dbc6b8b3361b9e0a6bcb70580ae8ae
ENCFF674DZH.tabix.bed.gz 567.01 KB a59037a2b3f8294f208b3049b6f2b8be
ENCFF674DZH.tabix.bed.gz.tbi 264.51 KB db266031021a84482cb0e92bc7bbf1d5
genomic_resource.yaml 2.44 KB 92bba933097c1be9ca45f80f81bf3a59
statistics/