Resource

Id DNase-seq/ENCSR840QVXcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR840QVX [biosample_summary="Homo sapiens muscle of arm tissue male embryo (91 days)"]
Description
Labels
  • accession: ENCSR840QVX
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001499/
  • biosample_summary: Homo sapiens muscle of arm tissue male embryo (91 days)
  • date_created: 2015-09-16T21:42:40.330135+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR840QVX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (91 days)
  • status: released
  • submitter_comment: This experiment was originally archived, but has been unarchived on Sept 8, 2025 after a lab review determined the biosample was not mislabeled.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR840QVX float

DNase-seq_ENCSR840QVX
DNase-seq ENCSR840QVX [biosample_summary="Homo sapiens muscle of arm tissue male embryo (91 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR840QVX [4, 8e+03]
n
64,035,446
mean
161
sd
357

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 640354461.99% 426113
chr1 5449634 2.19% 36267
chr1_KI270706v1_random 750 0.43% 5
chr1_KI270707v1_random 150 0.47% 1
chr1_KI270708v1_random 600 0.47% 4
chr1_KI270709v1_random 750 1.12% 5
chr1_KI270711v1_random 300 0.71% 2
chr1_KI270712v1_random 1500 0.85% 10
chr1_KI270713v1_random 900 2.21% 6
chr1_KI270714v1_random 300 0.72% 2
chr2 5314530 2.19% 35375
chr3 4254092 2.15% 28307
chr4 3530610 1.86% 23504
chr4_GL000008v2_random 1800 0.86% 12
chr5 3711815 2.04% 24685
chr6 3816216 2.23% 25396
chr7 3328878 2.09% 22151
chr8 3131413 2.16% 20837
chr9 2736875 1.98% 18213
chr9_KI270717v1_random 450 1.12% 3
chr9_KI270718v1_random 300 0.79% 2
chr9_KI270719v1_random 600 0.34% 4
chr10 3207830 2.40% 21337
chr11 3146472 2.33% 20934
chr11_KI270721v1_random 1050 1.05% 7
chr12 3027701 2.27% 20151
chr13 1956429 1.71% 13028
chr14 2024793 1.89% 13473
chr14_GL000009v2_random 900 0.45% 6
chr14_GL000194v1_random 1500 0.78% 10
chr14_GL000225v1_random 4050 1.92% 27
chr14_KI270722v1_random 150 0.08% 1
chr14_KI270723v1_random 450 1.18% 3
chr14_KI270724v1_random 1050 2.65% 7
chr14_KI270726v1_random 300 0.69% 2
chr15 1980484 1.94% 13180
chr15_KI270727v1_random 150 0.03% 1
chr16 1943983 2.15% 12935
chr16_KI270728v1_random 450 0.02% 3
chr17 2400910 2.88% 15974
chr17_GL000205v2_random 4050 2.18% 27
chr17_KI270729v1_random 4500 1.60% 30
chr17_KI270730v1_random 750 0.67% 5
chr18 1585429 1.97% 10548
chr19 1747796 2.98% 11634
chr20 1628876 2.53% 10844
chr21 790553 1.69% 5254
chr22 1029289 2.03% 6847
chr22_KI270732v1_random 450 1.08% 3
chr22_KI270733v1_random 4500 2.50% 30
chr22_KI270734v1_random 150 0.09% 1
chr22_KI270735v1_random 150 0.35% 1
chr22_KI270736v1_random 1500 0.82% 10
chr22_KI270737v1_random 150 0.14% 1
chr22_KI270738v1_random 600 0.60% 4
chrUn_GL000195v1 2250 1.23% 15
chrUn_GL000214v1 900 0.65% 6
chrUn_GL000216v2 5250 2.97% 34
chrUn_GL000218v1 900 0.56% 6
chrUn_GL000219v1 3750 2.09% 25
chrUn_GL000220v1 900 0.56% 6
chrUn_GL000224v1 1650 0.92% 11
chrUn_KI270333v1 900 33.35% 6
chrUn_KI270336v1 150 14.62% 1
chrUn_KI270337v1 300 26.76% 2
chrUn_KI270417v1 150 7.34% 1
chrUn_KI270429v1 150 11.02% 1
chrUn_KI270435v1 450 0.48% 3
chrUn_KI270438v1 3750 3.33% 25
chrUn_KI270442v1 5100 1.30% 34
chrUn_KI270448v1 150 1.88% 1
chrUn_KI270465v1 150 8.46% 1
chrUn_KI270466v1 150 12.17% 1
chrUn_KI270467v1 1200 30.61% 8
chrUn_KI270468v1 150 3.70% 1
chrUn_KI270509v1 150 6.47% 1
chrUn_KI270511v1 150 1.85% 1
chrUn_KI270512v1 150 0.66% 1
chrUn_KI270519v1 1350 0.98% 9
chrUn_KI270521v1 150 1.96% 1
chrUn_KI270538v1 1350 1.48% 9
chrUn_KI270584v1 150 3.32% 1
chrUn_KI270589v1 150 0.34% 1
chrUn_KI270590v1 150 3.20% 1
chrUn_KI270591v1 150 2.59% 1
chrUn_KI270742v1 150 0.08% 1
chrUn_KI270743v1 600 0.28% 4
chrUn_KI270744v1 2850 1.69% 19
chrUn_KI270746v1 300 0.45% 2
chrUn_KI270747v1 150 0.08% 1
chrUn_KI270749v1 600 0.38% 4
chrUn_KI270750v1 750 0.50% 5
chrUn_KI270751v1 300 0.20% 2
chrUn_KI270752v1 300 1.08% 2
chrUn_KI270753v1 150 0.24% 1
chrUn_KI270754v1 1200 2.99% 8
chrX 2097828 1.34% 13956
chrY 118160 0.21% 785
3269 contigs with no values (119621813 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 426113 14 450 150.28 150
global segment-length histogram

Files

Filename Size md5
ENCFF498BSC.bed.gz 4.02 MB 4231433a221d6713247f7c2e52c4fe66
ENCFF498BSC.tabix.bed.gz 3.43 MB f986f0a9d8c1c81700acce446ecf34ba
ENCFF498BSC.tabix.bed.gz.tbi 919.47 KB 7eb9820f6c97dcbef88319d15fdaf0c3
genomic_resource.yaml 4.43 KB e604ece5dfb918cc89ea6eeeb5191f30
statistics/