Resource

Id DNase-seq/ENCSR840QLAcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR840QLA [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL TNF-alpha for 48 hours"]
Description
Labels
  • accession: ENCSR840QLA
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL TNF-alpha for 48 hours
  • date_created: 2020-04-19T18:36:59.655640+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR840QLA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL TNF-alpha for 48 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR840QLA float

DNase-seq_ENCSR840QLA
DNase-seq ENCSR840QLA [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL TNF-alpha for 48 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR840QLA [0.406, 74.4]
n
7,805,970
mean
8.6
sd
9.5

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 78059700.24% 43718
chr1 793028 0.32% 4440
chr2 557259 0.23% 3147
chr3 439779 0.22% 2470
chr4 266543 0.14% 1477
chr5 352219 0.19% 1990
chr6 460400 0.27% 2585
chr7 349574 0.22% 1973
chr8 298854 0.21% 1726
chr9 329145 0.24% 1837
chr10 349538 0.26% 1991
chr11 394589 0.29% 2198
chr12 393900 0.30% 2181
chr13 162639 0.14% 918
chr14 265664 0.25% 1488
chr15 260774 0.26% 1494
chr16 332671 0.37% 1842
chr17 445486 0.54% 2466
chr18 126480 0.16% 736
chr19 514136 0.88% 2755
chr20 225734 0.35% 1278
chr21 92820 0.20% 526
chr22 188192 0.37% 1064
chrX 198542 0.13% 1090
chrY 8004 0.01% 46
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 43718 5 700 178.55 180
global segment-length histogram

Files

Filename Size md5
ENCFF316SKC.bed.gz 476.19 KB f4eb97f4d4dd5d2e5fa1ed28653c6437
ENCFF316SKC.tabix.bed.gz 429.52 KB 87a6b84f2cfcde30cc5936efe6d20251
ENCFF316SKC.tabix.bed.gz.tbi 234.65 KB 913a4a936059c211162fd9866a5d7244
genomic_resource.yaml 2.42 KB ce5914c4e0282c096ca28379f3a8f5a7
statistics/