Resource

Id DNase-seq/ENCSR838IPFcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR838IPF [biosample_summary="Homo sapiens thymus tissue female embryo (105 days)"]
Description
Labels
  • accession: ENCSR838IPF
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002370/
  • biosample_summary: Homo sapiens thymus tissue female embryo (105 days)
  • date_created: 2015-09-16T21:43:03.267550+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR838IPF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (105 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR838IPF float

DNase-seq_ENCSR838IPF
DNase-seq ENCSR838IPF [biosample_summary="Homo sapiens thymus tissue female embryo (105 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR838IPF [4, 2.34e+03]
n
8,053,465
mean
61.2
sd
73.1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 80534650.25% 53504
chr1 763498 0.31% 5073
chr2 632464 0.26% 4201
chr3 511287 0.26% 3397
chr4 369112 0.19% 2447
chr5 412503 0.23% 2740
chr6 485441 0.28% 3228
chr7 388418 0.24% 2589
chr8 336037 0.23% 2228
chr9 330236 0.24% 2194
chr10 376741 0.28% 2499
chr11 391293 0.29% 2605
chr12 421762 0.32% 2796
chr13 199960 0.17% 1330
chr14 266548 0.25% 1770
chr15 256605 0.25% 1705
chr16 282124 0.31% 1878
chr17 394496 0.47% 2622
chr18 161700 0.20% 1071
chr19 362551 0.62% 2408
chr20 209613 0.33% 1389
chr21 102251 0.22% 680
chr22 159482 0.31% 1062
chrX 236043 0.15% 1570
chrY 3300 0.01% 22
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 53504 21 450 150.52 150
global segment-length histogram

Files

Filename Size md5
ENCFF880KWE.bed.gz 522.63 KB bc9ab0dff5fb77a5eea9c9c88dc6cc5d
ENCFF880KWE.tabix.bed.gz 448.67 KB 7d86c34919187e2a4668f20c3099300e
ENCFF880KWE.tabix.bed.gz.tbi 278.07 KB 4a3de6f9584f239c0abaff06a2a7e477
genomic_resource.yaml 1.39 KB bde0d92048877e7a7927eedbd363c7c5
statistics/