Resource

Id DNase-seq/ENCSR831QMZcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR831QMZ [biosample_summary="Homo sapiens placenta tissue female embryo"]
Description
Labels
  • accession: ENCSR831QMZ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001987/
  • biosample_summary: Homo sapiens placenta tissue female embryo
  • date_created: 2019-08-02T16:57:25.609283+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR831QMZ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR831QMZ float

DNase-seq_ENCSR831QMZ
DNase-seq ENCSR831QMZ [biosample_summary="Homo sapiens placenta tissue female embryo"]
 HISTOGRAM FOR DNase-seq_ENCSR831QMZ [0.0302, 40]
n
31,203,151
mean
1.78
sd
2.99

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 312031510.97% 164462
chr1 2866430 1.15% 15197
chr2 2509195 1.04% 13324
chr3 1685224 0.85% 9085
chr4 1109707 0.58% 5868
chr5 1438131 0.79% 7782
chr6 1430148 0.84% 7804
chr7 1727839 1.08% 9109
chr8 1308627 0.90% 6827
chr9 1421453 1.03% 7461
chr10 1692553 1.27% 8870
chr11 1871677 1.39% 9509
chr12 1307689 0.98% 6979
chr13 557725 0.49% 3037
chr14 1151167 1.08% 5995
chr15 1180842 1.16% 6153
chr16 1176182 1.30% 6141
chr17 1621617 1.95% 8440
chr18 567546 0.71% 3042
chr19 1380009 2.35% 7116
chr20 1007962 1.56% 5335
chr21 491315 1.05% 2509
chr22 969570 1.91% 4897
chrX 728206 0.47% 3962
chrY 2337 <0.01% 20
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 164462 1 1160 189.73 180
global segment-length histogram

Files

Filename Size md5
ENCFF621UGP.bed.gz 1.72 MB 657fc7ebc3c5de520030c206a5634752
ENCFF621UGP.tabix.bed.gz 1.59 MB 07a0d67a8a11e8a3a6eea42c9ce02de1
ENCFF621UGP.tabix.bed.gz.tbi 397.09 KB 4536db70936341f10e69b07a657f3105
genomic_resource.yaml 1.17 KB 4bd03982924231b27d226cf81c7fcdbb
statistics/