Resource

Id DNase-seq/ENCSR828FVZcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR828FVZ [biosample_summary="Homo sapiens body of pancreas tissue female adult (53 years)"]
Description
Labels
  • accession: ENCSR828FVZ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001150/
  • biosample_summary: Homo sapiens body of pancreas tissue female adult (53 years)
  • date_created: 2019-07-29T20:40:56.659000+00:00
  • date_released: 2019-11-08
  • doi: 10.17989/ENCSR828FVZ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR828FVZ float

DNase-seq_ENCSR828FVZ
DNase-seq ENCSR828FVZ [biosample_summary="Homo sapiens body of pancreas tissue female adult (53 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR828FVZ [7, 2.46e+04]
n
11,651,692
mean
146
sd
224

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 116516920.36% 77607
chr1 1183288 0.48% 7884
chr2 876818 0.36% 5840
chr3 712095 0.36% 4742
chr4 475943 0.25% 3168
chr5 559336 0.31% 3727
chr6 643196 0.38% 4284
chr7 578890 0.36% 3854
chr8 487458 0.34% 3249
chr9 511287 0.37% 3405
chr10 561704 0.42% 3740
chr11 636234 0.47% 4234
chr12 560011 0.42% 3731
chr13 250765 0.22% 1670
chr14 395810 0.37% 2638
chr15 402433 0.39% 2678
chr16 442358 0.49% 2945
chr17 588393 0.71% 3921
chr18 219822 0.27% 1466
chr19 531473 0.91% 3539
chr20 325670 0.51% 2169
chr21 130500 0.28% 870
chr22 265560 0.52% 1769
chrX 311898 0.20% 2079
chrY 750 <0.01% 5
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 77607 38 450 150.14 150
global segment-length histogram

Files

Filename Size md5
ENCFF894HSB.bed.gz 771.49 KB eaf8a3aac027a9b3dc55f7929ca61854
ENCFF894HSB.tabix.bed.gz 664.7 KB 39739cce6348a765639b14b4ca405177
ENCFF894HSB.tabix.bed.gz.tbi 357.66 KB 49b14b187a7161d42dad140561239801
genomic_resource.yaml 2.01 KB 9daf38b5d6a58d0667bb3dd5e101d1f5
statistics/