Resource
| Id | DNase-seq/ENCSR826ERZ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR826ERZ [biosample_summary="Homo sapiens muscle of arm tissue embryo (101 days)"] |
| Description |
status: released biological_replicates: Rep 1 summary: embryo (101 days) output_type: peaks audit_warning: Alignment file {ENCFF892CSR|/files/ENCFF892CSR/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 24774525 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR826ERZ | float |
DNase-seq_ENCSR826ERZ |
DNase-seq ENCSR826ERZ [biosample_summary="Homo sapiens muscle of arm tissue embryo (101 days)"]
|
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[0.283, 19.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 8250667 | 0.26% | 43723 |
| chr1 | 738862 | 0.30% | 3861 |
| chr2 | 669413 | 0.28% | 3553 |
| chr3 | 545573 | 0.28% | 2918 |
| chr4 | 425687 | 0.22% | 2249 |
| chr5 | 489602 | 0.27% | 2578 |
| chr6 | 538022 | 0.31% | 2788 |
| chr7 | 396416 | 0.25% | 2155 |
| chr8 | 391935 | 0.27% | 2092 |
| chr9 | 340028 | 0.25% | 1836 |
| chr10 | 385875 | 0.29% | 2057 |
| chr11 | 423633 | 0.31% | 2224 |
| chr12 | 423247 | 0.32% | 2233 |
| chr13 | 227722 | 0.20% | 1207 |
| chr14 | 273038 | 0.26% | 1437 |
| chr15 | 261437 | 0.26% | 1372 |
| chr16 | 246421 | 0.27% | 1325 |
| chr17 | 319156 | 0.38% | 1724 |
| chr18 | 185231 | 0.23% | 1002 |
| chr19 | 336695 | 0.57% | 1673 |
| chr20 | 197249 | 0.31% | 1069 |
| chr21 | 95828 | 0.21% | 515 |
| chr22 | 134562 | 0.26% | 737 |
| chrX | 197832 | 0.13% | 1080 |
| chrY | 7203 | 0.01% | 38 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 43723 | 2 | 780 | 188.7 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF133KLM.bed.gz | 458.85 KB | 1aeba659794b7be9bf336ce6752e876a |
| ENCFF133KLM.tabix.bed.gz | 408.58 KB | d19348da2d86f6c3ddfa1d33747fa01f |
| ENCFF133KLM.tabix.bed.gz.tbi | 252.96 KB | aa0e93fc76ec6f18a3902c0eb74eafb2 |
| genomic_resource.yaml | 1.81 KB | f0ff6432d65fcebe73e27d4ab815397d |
| statistics/ |
