Resource
| Id | DNase-seq/ENCSR822GDF |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR822GDF [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (90 or above years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF984AFR|/files/ENCFF984AFR/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.33. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR822GDF | float |
DNase-seq_ENCSR822GDF |
DNase-seq ENCSR822GDF [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (90 or above years)"]
|
 |
[0.0608, 20.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 14560960 | 0.45% | 83672 |
| chr1 | 1434247 | 0.58% | 8176 |
| chr2 | 1177911 | 0.49% | 6842 |
| chr3 | 890763 | 0.45% | 5163 |
| chr4 | 564697 | 0.30% | 3320 |
| chr5 | 807488 | 0.44% | 4678 |
| chr6 | 768924 | 0.45% | 4473 |
| chr7 | 714559 | 0.45% | 4140 |
| chr8 | 632760 | 0.44% | 3704 |
| chr9 | 629094 | 0.45% | 3628 |
| chr10 | 716256 | 0.54% | 4159 |
| chr11 | 840549 | 0.62% | 4779 |
| chr12 | 689738 | 0.52% | 3928 |
| chr13 | 306616 | 0.27% | 1793 |
| chr14 | 461570 | 0.43% | 2632 |
| chr15 | 473768 | 0.46% | 2703 |
| chr16 | 513859 | 0.57% | 2896 |
| chr17 | 702509 | 0.84% | 3975 |
| chr18 | 275663 | 0.34% | 1686 |
| chr19 | 641286 | 1.09% | 3393 |
| chr20 | 458935 | 0.71% | 2652 |
| chr21 | 166054 | 0.36% | 959 |
| chr22 | 378939 | 0.75% | 2154 |
| chrX | 313621 | 0.20% | 1829 |
| chrY | 1154 | <0.01% | 10 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 83672 | 2 | 700 | 174.02 | 177 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF691UUG.bed.gz | 920.89 KB | 52f356c201b69da60279b2026fc65492 |
| ENCFF691UUG.tabix.bed.gz | 833.52 KB | 1366d79b01a44ae4bd2deced58a99e1a |
| ENCFF691UUG.tabix.bed.gz.tbi | 370.76 KB | 3d5bf0cfb0066dce24eee199eed7abe6 |
| genomic_resource.yaml | 2.12 KB | 6d66418e7b7b4bf5564caa67c06ecba3 |
| statistics/ |