Resource

Id DNase-seq/ENCSR818JGZcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR818JGZ [biosample_summary="Homo sapiens limb tissue embryo (53 days) and embryo (56 days)"]
Description
Labels
  • accession: ENCSR818JGZ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002101/
  • biosample_summary: Homo sapiens limb tissue embryo (53 days) and embryo (56 days)
  • date_created: 2015-12-15T05:47:46.640258+00:00
  • date_released: 2016-05-09
  • doi: 10.17989/ENCSR818JGZ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: anisogenic
  • simple_biosample_summary: embryo (56 days) embryo (53 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR818JGZ float

DNase-seq_ENCSR818JGZ

DNase-seq ENCSR818JGZ [biosample_summary="Homo sapiens limb tissue embryo (53 days) and embryo (56 days)"]
HISTOGRAM FOR DNase-seq_ENCSR818JGZ [3, 2.69e+03]
n
40,647,120
mean
18.7
sd
20.7

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 406471201.26% 268940
chr1 3604010 1.45% 23861
chr2 3419840 1.41% 22634
chr3 2691250 1.36% 17813
chr4 2222350 1.17% 14691
chr5 2400840 1.32% 15878
chr6 2605700 1.53% 17252
chr7 2134350 1.34% 14115
chr8 1963170 1.35% 12969
chr9 1817350 1.31% 12007
chr10 2185690 1.63% 14457
chr11 2061680 1.53% 13662
chr12 2005050 1.50% 13259
chr13 1227080 1.07% 8110
chr14 1325430 1.24% 8759
chr15 1303330 1.28% 8631
chr16 1200640 1.33% 7946
chr17 1576840 1.89% 10436
chr18 991280 1.23% 6558
chr19 1047910 1.79% 6945
chr20 1041780 1.62% 6892
chr21 555470 1.19% 3667
chr22 637430 1.25% 4231
chrX 604200 0.39% 4004
chrY 24450 0.04% 163
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 268940 150 490 151.14 150
global segment-length histogram

Files

Filename Size md5
ENCFF556OSI.bed.gz 3.41 MB 8bbe53fa42cfb1f9f764abcdf2e121bc
ENCFF556OSI.tabix.bed.gz 2.4 MB b4510d18b8e2e4759fad934b30794cdd
ENCFF556OSI.tabix.bed.gz.tbi 660.53 KB 7948bc3aad61bf0736beef4bb214d1ff
genomic_resource.yaml 1.26 KB 98ccd79319ddcdc6f2915f2f0bd5d6aa
statistics/