Resource

Id DNase-seq/ENCSR815DWWcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR815DWW [biosample_summary="Homo sapiens T-cell male adult (19 years)"]
Description
Labels
  • accession: ENCSR815DWW
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell male adult (19 years)
  • date_created: 2020-04-12T19:00:09.334402+00:00
  • date_released: 2020-09-25
  • doi: 10.17989/ENCSR815DWW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (19 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR815DWW float

DNase-seq_ENCSR815DWW

DNase-seq ENCSR815DWW [biosample_summary="Homo sapiens T-cell male adult (19 years)"]
HISTOGRAM FOR DNase-seq_ENCSR815DWW [0.194, 99.9]
n
8,562,018
mean
8.43
sd
11.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 85620180.27% 46897
chr1 855571 0.34% 4689
chr2 591540 0.24% 3270
chr3 451799 0.23% 2470
chr4 294134 0.15% 1607
chr5 378446 0.21% 2078
chr6 498475 0.29% 2721
chr7 398934 0.25% 2204
chr8 316312 0.22% 1739
chr9 342670 0.25% 1899
chr10 373936 0.28% 2053
chr11 445122 0.33% 2426
chr12 431103 0.32% 2350
chr13 170179 0.15% 938
chr14 301455 0.28% 1663
chr15 270662 0.27% 1505
chr16 354664 0.39% 1944
chr17 538458 0.65% 2931
chr18 133411 0.17% 742
chr19 587993 1.00% 3096
chr20 246073 0.38% 1382
chr21 105282 0.23% 572
chr22 217099 0.43% 1207
chrX 248760 0.16% 1357
chrY 9940 0.02% 54
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 46897 8 760 182.57 180
global segment-length histogram

Files

Filename Size md5
ENCFF237YDB.bed.gz 528.92 KB 54b548a060fb849eefb0374e10c160bb
ENCFF237YDB.tabix.bed.gz 479.84 KB 89749b4b2debb995c6bb092b4f0e464e
ENCFF237YDB.tabix.bed.gz.tbi 229.21 KB e7aa0ad1550f1f1d1d30ecff591a5080
genomic_resource.yaml 1.18 KB 863f7b33d6de5abf18972096af083bcc
statistics/