Resource

Id DNase-seq/ENCSR810CTBcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR810CTB [biosample_summary="Homo sapiens activated T-cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours"]
Description
Labels
  • accession: ENCSR810CTB
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000537/
  • biosample_summary: Homo sapiens activated T-cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours
  • date_created: 2020-04-19T18:36:51.319345+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR810CTB
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR810CTB float

DNase-seq_ENCSR810CTB
DNase-seq ENCSR810CTB [biosample_summary="Homo sapiens activated T-cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR810CTB [0.251, 32.4]
n
9,518,242
mean
4.46
sd
4.52

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 95182420.30% 49553
chr1 977400 0.39% 5055
chr2 670633 0.28% 3498
chr3 532386 0.27% 2766
chr4 337077 0.18% 1728
chr5 427267 0.24% 2255
chr6 564327 0.33% 2943
chr7 434100 0.27% 2274
chr8 357373 0.25% 1893
chr9 391637 0.28% 2043
chr10 416883 0.31% 2186
chr11 474783 0.35% 2494
chr12 496943 0.37% 2578
chr13 200686 0.18% 1039
chr14 323734 0.30% 1681
chr15 316881 0.31% 1676
chr16 393520 0.44% 2019
chr17 571457 0.69% 2934
chr18 149867 0.19% 794
chr19 602063 1.03% 3047
chr20 269455 0.42% 1434
chr21 113223 0.24% 585
chr22 219946 0.43% 1164
chrX 265984 0.17% 1415
chrY 10617 0.02% 52
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 49553 4 820 192.08 180
global segment-length histogram

Files

Filename Size md5
ENCFF619VKT.bed.gz 543.24 KB 7c1c3040c7faee76638be3133b8700e7
ENCFF619VKT.tabix.bed.gz 492.8 KB 2451b5df7c82df3e96272a3c3db4a4b8
ENCFF619VKT.tabix.bed.gz.tbi 247.9 KB c4f9fdd5da2676d2d854e44381be1289
genomic_resource.yaml 2.14 KB d43e1575b412c237bd95fe374d7217ab
statistics/