Resource

Id DNase-seq/ENCSR805XIFcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR805XIF [biosample_summary="Homo sapiens femur tissue female embryo (98 days)"]
Description
Labels
  • accession: ENCSR805XIF
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000981/
  • biosample_summary: Homo sapiens femur tissue female embryo (98 days)
  • date_created: 2017-06-26T19:37:24.688023+00:00
  • date_released: 2017-12-13
  • doi: 10.17989/ENCSR805XIF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (98 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR805XIF float

DNase-seq_ENCSR805XIF
DNase-seq ENCSR805XIF [biosample_summary="Homo sapiens femur tissue female embryo (98 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR805XIF [1, 1.27e+04]
n
37,465,376
mean
257
sd
553

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 374653761.16% 249412
chr1 3257631 1.31% 21688
chr2 3104968 1.28% 20665
chr3 2280511 1.15% 15188
chr4 1662889 0.87% 11070
chr5 1958930 1.08% 13041
chr6 2005111 1.17% 13350
chr7 1790962 1.12% 11929
chr8 1681996 1.16% 11198
chr9 1744496 1.26% 11610
chr10 2015500 1.51% 13414
chr11 2029470 1.50% 13506
chr12 1633985 1.23% 10886
chr13 906987 0.79% 6039
chr14 1253646 1.17% 8349
chr15 1301990 1.28% 8678
chr16 1301935 1.44% 8669
chr17 1816184 2.18% 12089
chr18 797517 0.99% 5309
chr19 1362806 2.32% 9067
chr20 1104570 1.71% 7346
chr21 516799 1.11% 3441
chr22 905781 1.78% 6022
chrX 1020812 0.65% 6792
chrY 9900 0.02% 66
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 249412 4 450 150.21 150
global segment-length histogram

Files

Filename Size md5
ENCFF854QBS.bed.gz 2.39 MB b037b224048eeaec99be2b47f24869ee
ENCFF854QBS.tabix.bed.gz 2.05 MB 434f2de4ffd6abf91893c426b4d6329d
ENCFF854QBS.tabix.bed.gz.tbi 645.09 KB f3e4665628b5bf33cadeb11a60fdc1cc
genomic_resource.yaml 1.38 KB d706e73e7e559a3c48455e704ad7d67b
statistics/