Resource
| Id | DNase-seq/ENCSR803VCR |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR803VCR [biosample_summary="Homo sapiens left lung tissue female embryo (91 days)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (91 days) output_type: peaks audit_warning: Alignment file {ENCFF288UKL|/files/ENCFF288UKL/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 33169190 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR803VCR | float |
DNase-seq_ENCSR803VCR |
DNase-seq ENCSR803VCR [biosample_summary="Homo sapiens left lung tissue female embryo (91 days)"]
|
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[0.242, 18.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 12425440 | 0.39% | 64188 |
| chr1 | 1135491 | 0.46% | 5813 |
| chr2 | 981536 | 0.41% | 5103 |
| chr3 | 822260 | 0.41% | 4226 |
| chr4 | 635588 | 0.33% | 3283 |
| chr5 | 689761 | 0.38% | 3562 |
| chr6 | 758332 | 0.44% | 3900 |
| chr7 | 644753 | 0.40% | 3400 |
| chr8 | 567496 | 0.39% | 2978 |
| chr9 | 517270 | 0.37% | 2672 |
| chr10 | 610648 | 0.46% | 3171 |
| chr11 | 631575 | 0.47% | 3238 |
| chr12 | 623670 | 0.47% | 3221 |
| chr13 | 329665 | 0.29% | 1732 |
| chr14 | 400845 | 0.37% | 2051 |
| chr15 | 406429 | 0.40% | 2113 |
| chr16 | 390952 | 0.43% | 2017 |
| chr17 | 507382 | 0.61% | 2591 |
| chr18 | 270143 | 0.34% | 1405 |
| chr19 | 519136 | 0.89% | 2489 |
| chr20 | 309577 | 0.48% | 1682 |
| chr21 | 125579 | 0.27% | 669 |
| chr22 | 201881 | 0.40% | 1064 |
| chrX | 345311 | 0.22% | 1807 |
| chrY | 160 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 64188 | 1 | 940 | 193.58 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF624WLO.bed.gz | 677.24 KB | e1a75257a8069e6005c4f7c03753d33f |
| ENCFF624WLO.tabix.bed.gz | 610.92 KB | f4bf1deb089fc204156e88c5a5817568 |
| ENCFF624WLO.tabix.bed.gz.tbi | 338.01 KB | b9f1ea4a54eeb0a1d9ee3c78d7c1ec19 |
| genomic_resource.yaml | 1.83 KB | a1534450e0045b63ab9f76b36f2a974a |
| statistics/ |
