Resource

Id DNase-seq/ENCSR803BLTcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR803BLT [biosample_summary="Homo sapiens inflammatory macrophage male adult (21 years) treated with lipopolysaccharide for 1 hour"]
Description
Labels
  • accession: ENCSR803BLT
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000863/
  • biosample_summary: Homo sapiens inflammatory macrophage male adult (21 years) treated with lipopolysaccharide for 1 hour
  • date_created: 2021-11-18T17:43:08.141321+00:00
  • date_released: 2022-06-07
  • doi: 10.17989/ENCSR803BLT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (21 years) treated with lipopolysaccharide for 1 hour
  • status: released
  • submitter_comment: This dataset includes replicates and files that were previously associated with dataset ENCSR643ZGR.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR803BLT float

DNase-seq_ENCSR803BLT
DNase-seq ENCSR803BLT [biosample_summary="Homo sapiens inflammatory macrophage male adult (21 years) treated with lipopolysaccharide for 1 hour"]
 HISTOGRAM FOR DNase-seq_ENCSR803BLT [0.0425, 19.7]
n
30,809,929
mean
1.54
sd
1.44

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 308099290.96% 155653
chr1 2952164 1.19% 14832
chr2 2491675 1.03% 12573
chr3 2073178 1.05% 10425
chr4 1362151 0.72% 6863
chr5 1631905 0.90% 8267
chr6 1932613 1.13% 9541
chr7 1549472 0.97% 7817
chr8 1363850 0.94% 6934
chr9 1292192 0.93% 6553
chr10 1531609 1.14% 7690
chr11 1486252 1.10% 7513
chr12 1601258 1.20% 8046
chr13 706223 0.62% 3595
chr14 961879 0.90% 4847
chr15 1055120 1.03% 5330
chr16 988050 1.09% 5081
chr17 1424400 1.71% 7230
chr18 613121 0.76% 3159
chr19 1167523 1.99% 5889
chr20 828603 1.29% 4264
chr21 405003 0.87% 1995
chr22 568123 1.12% 2921
chrX 792393 0.51% 4130
chrY 31172 0.05% 158
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 155653 1 1060 197.94 200
global segment-length histogram

Files

Filename Size md5
ENCFF963PZF.bed.gz 1.66 MB e1df5db9329661317cde58634725b003
ENCFF963PZF.tabix.bed.gz 1.53 MB 510e3117ca14d536cadb583ce54a0351
ENCFF963PZF.tabix.bed.gz.tbi 502.56 KB 705050cb45bace7c75022977cb275c0c
genomic_resource.yaml 1.55 KB b57ba9d13a5dc77610b9a4ac291b32b2
statistics/