Resource

Id DNase-seq/ENCSR802ZYEcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR802ZYE [biosample_summary="Homo sapiens left lobe of liver tissue male adult (45 years)"]
Description
Labels
  • accession: ENCSR802ZYE
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001115/
  • biosample_summary: Homo sapiens left lobe of liver tissue male adult (45 years)
  • date_created: 2019-04-10T20:24:31.504003+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR802ZYE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (45 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR802ZYE float

DNase-seq_ENCSR802ZYE
DNase-seq ENCSR802ZYE [biosample_summary="Homo sapiens left lobe of liver tissue male adult (45 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR802ZYE [0.0307, 16.1]
n
29,844,884
mean
1.2
sd
1.74

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 298448840.93% 141755
chr1 2661500 1.07% 12649
chr2 2611251 1.08% 12383
chr3 1639976 0.83% 7874
chr4 875932 0.46% 4213
chr5 1372570 0.76% 6631
chr6 1290510 0.76% 6238
chr7 1422995 0.89% 6857
chr8 1345374 0.93% 6325
chr9 1471324 1.06% 6844
chr10 1716133 1.28% 8180
chr11 1641057 1.21% 7676
chr12 1246976 0.94% 5968
chr13 579687 0.51% 2741
chr14 1018430 0.95% 4770
chr15 1250931 1.23% 5954
chr16 1111162 1.23% 5344
chr17 1569228 1.88% 7447
chr18 643262 0.80% 3076
chr19 1281601 2.19% 5930
chr20 954133 1.48% 4601
chr21 498051 1.07% 2255
chr22 1098244 2.16% 5061
chrX 514826 0.33% 2580
chrY 29731 0.05% 158
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 141755 1 1383 210.54 200
global segment-length histogram

Files

Filename Size md5
ENCFF644RPH.bed.gz 1.44 MB 6e33e46da22fd0d9cd1e474a72c8fa1f
ENCFF644RPH.tabix.bed.gz 1.34 MB 4f6fc40cfc1dac47ccae266576d48968
ENCFF644RPH.tabix.bed.gz.tbi 337.1 KB 87cabf453a43d10054bb303e1dc52950
genomic_resource.yaml 2.05 KB 325f5650276100395c06ccac982df3ee
statistics/