Resource

Id DNase-seq/ENCSR802NBCcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR802NBC [biosample_summary="Homo sapiens with Alzheimer''s disease; head of caudate nucleus tissue female adult (90 or above years)"]
Description
Labels
  • accession: ENCSR802NBC
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002626/
  • biosample_summary: Homo sapiens with Alzheimer's disease; head of caudate nucleus tissue female adult (90 or above years)
  • date_created: 2021-04-01T15:48:57.710234+00:00
  • date_released: 2021-06-17
  • doi: 10.17989/ENCSR802NBC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years) with Alzheimer's disease
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR802NBC float

DNase-seq_ENCSR802NBC
DNase-seq ENCSR802NBC [biosample_summary="Homo sapiens with Alzheimer''s disease; head of caudate nucleus tissue female adult (90 or above years)"]
 HISTOGRAM FOR DNase-seq_ENCSR802NBC [0.0425, 39.4]
n
24,648,794
mean
2.46
sd
3.44

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 246487940.77% 133335
chr1 2283339 0.92% 12233
chr2 1921488 0.79% 10464
chr3 1413405 0.71% 7692
chr4 984662 0.52% 5339
chr5 1228439 0.68% 6692
chr6 1272936 0.75% 6951
chr7 1247419 0.78% 6848
chr8 1120043 0.77% 6097
chr9 1063183 0.77% 5735
chr10 1236829 0.92% 6719
chr11 1387877 1.03% 7513
chr12 1159887 0.87% 6224
chr13 537514 0.47% 2963
chr14 814919 0.76% 4386
chr15 835383 0.82% 4511
chr16 979130 1.08% 5258
chr17 1196752 1.44% 6437
chr18 520004 0.65% 2874
chr19 1094670 1.87% 5665
chr20 764325 1.19% 4101
chr21 318662 0.68% 1753
chr22 659113 1.30% 3528
chrX 608154 0.39% 3346
chrY 661 <0.01% 6
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 133335 2 800 184.86 180
global segment-length histogram

Files

Filename Size md5
ENCFF510VDM.bed.gz 1.44 MB 4cf8dfb69c7669601dfd199a55dbb574
ENCFF510VDM.tabix.bed.gz 1.32 MB 9bf953df972b5e646249baf0fa2afdd6
ENCFF510VDM.tabix.bed.gz.tbi 474.44 KB bfd9726916200286be66a041cf57c1f4
genomic_resource.yaml 1.44 KB b0b669f698b3cc4bfa583a90e0b4a828
statistics/