Resource

Id DNase-seq/ENCSR802AJEcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR802AJE [biosample_summary="Homo sapiens placenta tissue male embryo (85 days)"]
Description
Labels
  • accession: ENCSR802AJE
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001987/
  • biosample_summary: Homo sapiens placenta tissue male embryo (85 days)
  • date_created: 2015-09-16T21:42:43.006247+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR802AJE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (85 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR802AJE float

DNase-seq_ENCSR802AJE
DNase-seq ENCSR802AJE [biosample_summary="Homo sapiens placenta tissue male embryo (85 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR802AJE [4, 2.63e+03]
n
14,755,100
mean
44.7
sd
41.1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 147551000.46% 98202
chr1 1383402 0.56% 9212
chr2 1212829 0.50% 8069
chr3 1003941 0.51% 6686
chr4 764293 0.40% 5088
chr5 849015 0.47% 5648
chr6 920159 0.54% 6125
chr7 768797 0.48% 5114
chr8 657627 0.45% 4379
chr9 625108 0.45% 4162
chr10 704647 0.53% 4689
chr11 730134 0.54% 4860
chr12 742843 0.56% 4942
chr13 376799 0.33% 2501
chr14 460393 0.43% 3067
chr15 475393 0.47% 3164
chr16 457468 0.51% 3043
chr17 573824 0.69% 3819
chr18 337334 0.42% 2243
chr19 518631 0.88% 3457
chr20 375150 0.58% 2495
chr21 177300 0.38% 1181
chr22 250819 0.49% 1671
chrX 364144 0.23% 2420
chrY 25050 0.04% 167
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 98202 26 427 150.25 150
global segment-length histogram

Files

Filename Size md5
ENCFF880QTT.bed.gz 953.18 KB 6585441191557e9258da5bccd5903e12
ENCFF880QTT.tabix.bed.gz 813.35 KB e9a98f90cf46501d5fed4db08db1ac06
ENCFF880QTT.tabix.bed.gz.tbi 478.89 KB 908cf574eae1d54457c9c7c176290327
genomic_resource.yaml 1.38 KB 908cc0cdf9cf917d10e84a8e273763c5
statistics/