Resource
| Id | DNase-seq/ENCSR800KVI |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR800KVI [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (84 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (84 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF306XXE|/files/ENCFF306XXE/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.30. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR800KVI | float |
DNase-seq_ENCSR800KVI |
DNase-seq ENCSR800KVI [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (84 years)"]
|
 |
[0.0756, 11.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 10474124 | 0.33% | 53661 |
| chr1 | 868363 | 0.35% | 4551 |
| chr2 | 905090 | 0.37% | 4614 |
| chr3 | 477412 | 0.24% | 2501 |
| chr4 | 429109 | 0.23% | 2160 |
| chr5 | 484438 | 0.27% | 2475 |
| chr6 | 388740 | 0.23% | 2075 |
| chr7 | 586705 | 0.37% | 2995 |
| chr8 | 498127 | 0.34% | 2458 |
| chr9 | 460625 | 0.33% | 2376 |
| chr10 | 561140 | 0.42% | 2856 |
| chr11 | 732846 | 0.54% | 3638 |
| chr12 | 354188 | 0.27% | 1870 |
| chr13 | 212138 | 0.19% | 1038 |
| chr14 | 371830 | 0.35% | 1888 |
| chr15 | 344218 | 0.34% | 1778 |
| chr16 | 410011 | 0.45% | 2149 |
| chr17 | 575308 | 0.69% | 2966 |
| chr18 | 147417 | 0.18% | 781 |
| chr19 | 505781 | 0.86% | 2569 |
| chr20 | 314295 | 0.49% | 1600 |
| chr21 | 188681 | 0.40% | 963 |
| chr22 | 422341 | 0.83% | 2128 |
| chrX | 234193 | 0.15% | 1222 |
| chrY | 1128 | <0.01% | 10 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 53661 | 1 | 1060 | 195.19 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF328UXU.bed.gz | 551.52 KB | 95a185b99cf4475192ce4db8fe75e396 |
| ENCFF328UXU.tabix.bed.gz | 510.15 KB | a34df5e27a907b056d806401313e0c8c |
| ENCFF328UXU.tabix.bed.gz.tbi | 179.2 KB | aeb38b576973e196d2a401d527695532 |
| genomic_resource.yaml | 2.1 KB | 321ac374cb46ba7b49948ed477433b1e |
| statistics/ |