Resource
| Id | DNase-seq/ENCSR800ADR |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR800ADR [biosample_summary="Homo sapiens upper lobe of left lung tissue female adult (61 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (61 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF467XLG|/files/ENCFF467XLG/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR800ADR | float |
DNase-seq_ENCSR800ADR |
DNase-seq ENCSR800ADR [biosample_summary="Homo sapiens upper lobe of left lung tissue female adult (61 years)"]
|
 |
[0.0418, 26.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 27093578 | 0.84% | 132086 |
| chr1 | 2436318 | 0.98% | 11841 |
| chr2 | 2401870 | 0.99% | 11587 |
| chr3 | 1345432 | 0.68% | 6608 |
| chr4 | 913272 | 0.48% | 4348 |
| chr5 | 1186671 | 0.65% | 5773 |
| chr6 | 1061209 | 0.62% | 5360 |
| chr7 | 1414484 | 0.89% | 6916 |
| chr8 | 1213951 | 0.84% | 5865 |
| chr9 | 1193693 | 0.86% | 5845 |
| chr10 | 1622522 | 1.21% | 7875 |
| chr11 | 1472079 | 1.09% | 7057 |
| chr12 | 1065228 | 0.80% | 5300 |
| chr13 | 534879 | 0.47% | 2634 |
| chr14 | 936313 | 0.87% | 4564 |
| chr15 | 1058961 | 1.04% | 5177 |
| chr16 | 1110787 | 1.23% | 5469 |
| chr17 | 1543884 | 1.85% | 7497 |
| chr18 | 558045 | 0.69% | 2717 |
| chr19 | 1154029 | 1.97% | 5664 |
| chr20 | 858985 | 1.33% | 4245 |
| chr21 | 480547 | 1.03% | 2287 |
| chr22 | 912701 | 1.80% | 4342 |
| chrX | 616319 | 0.39% | 3104 |
| chrY | 1399 | <0.01% | 11 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 132086 | 1 | 1120 | 205.12 | 198 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF169ADV.bed.gz | 1.33 MB | 587a400922279e1f0a415c7e1f1361fc |
| ENCFF169ADV.tabix.bed.gz | 1.24 MB | 4d656c9003b15b6089e72712bf4e31d6 |
| ENCFF169ADV.tabix.bed.gz.tbi | 292.43 KB | 9dee4aa4cdbd3e7b13d609d7f3c4dc48 |
| genomic_resource.yaml | 2.08 KB | 7c6292fab08b270b5d6eb7e08670c4cf |
| statistics/ |