Resource

Id DNase-seq/ENCSR799MVHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR799MVH [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour"]
Description
Labels
  • accession: ENCSR799MVH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000896/
  • biosample_summary: Homo sapiens activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour
  • date_created: 2020-04-19T18:36:59.783443+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR799MVH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR799MVH float

DNase-seq_ENCSR799MVH
DNase-seq ENCSR799MVH [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour"]
 HISTOGRAM FOR DNase-seq_ENCSR799MVH [0.0795, 39.7]
n
8,001,223
mean
4.46
sd
5.28

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 80012230.25% 40510
chr1 802589 0.32% 4016
chr2 543331 0.22% 2764
chr3 410587 0.21% 2100
chr4 252541 0.13% 1275
chr5 357969 0.20% 1792
chr6 444501 0.26% 2249
chr7 350557 0.22% 1751
chr8 303181 0.21% 1580
chr9 320830 0.23% 1648
chr10 357243 0.27% 1823
chr11 453204 0.34% 2295
chr12 403450 0.30% 2008
chr13 152725 0.13% 760
chr14 268736 0.25% 1370
chr15 274121 0.27% 1409
chr16 318169 0.35% 1625
chr17 506329 0.61% 2544
chr18 125747 0.16% 643
chr19 548962 0.94% 2692
chr20 226869 0.35% 1188
chr21 123479 0.26% 632
chr22 217819 0.43% 1143
chrX 229821 0.15% 1160
chrY 8463 0.01% 43
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 40510 2 1000 197.51 200
global segment-length histogram

Files

Filename Size md5
ENCFF441KSA.bed.gz 454.31 KB 18f71b084087cb84ec1039ff5c2a05ad
ENCFF441KSA.tabix.bed.gz 415.03 KB 60cb4f492b584a350d94098092cc013d
ENCFF441KSA.tabix.bed.gz.tbi 195.09 KB 4146ab62ae8befcefb5e026255c3ca21
genomic_resource.yaml 1.59 KB 0f385563acd617dc92e55fed1f2d54af
statistics/