Resource

Id DNase-seq/ENCSR796SJVcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR796SJV [biosample_summary="Homo sapiens large intestine tissue female embryo (98 days)"]
Description
Labels
  • accession: ENCSR796SJV
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000059/
  • biosample_summary: Homo sapiens large intestine tissue female embryo (98 days)
  • date_created: 2015-09-16T21:42:19.922336+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR796SJV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (98 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR796SJV float

DNase-seq_ENCSR796SJV

DNase-seq ENCSR796SJV [biosample_summary="Homo sapiens large intestine tissue female embryo (98 days)"]
HISTOGRAM FOR DNase-seq_ENCSR796SJV [0.117, 29.1]
n
19,306,864
mean
2.48
sd
2.87

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 193068640.60% 106535
chr1 1887550 0.76% 10306
chr2 1495699 0.62% 8413
chr3 1229524 0.62% 6889
chr4 951042 0.50% 5363
chr5 1001943 0.55% 5606
chr6 1195635 0.70% 6558
chr7 988533 0.62% 5528
chr8 828844 0.57% 4570
chr9 818678 0.59% 4505
chr10 873804 0.65% 4856
chr11 1031956 0.76% 5629
chr12 975778 0.73% 5358
chr13 453511 0.40% 2568
chr14 626634 0.59% 3434
chr15 611717 0.60% 3380
chr16 663614 0.73% 3596
chr17 872860 1.05% 4677
chr18 421719 0.52% 2384
chr19 765218 1.31% 3939
chr20 501466 0.78% 2729
chr21 218894 0.47% 1226
chr22 374959 0.74% 2017
chrX 516089 0.33% 2995
chrY 1197 <0.01% 9
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 106535 1 820 181.23 180
global segment-length histogram

Files

Filename Size md5
ENCFF571DGW.bed.gz 1.13 MB ba489f54685e47d0307fb5cce47ffd7d
ENCFF571DGW.tabix.bed.gz 1.02 MB 71af92f0a0676f4ac326bd85e26a5128
ENCFF571DGW.tabix.bed.gz.tbi 452.75 KB 0d29450488489170dc30bd4a6b354498
genomic_resource.yaml 1.23 KB a945612c178559cadf16e6268b9f8562
statistics/