Resource

Id DNase-seq/ENCSR794KUScontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR794KUS [biosample_summary="Homo sapiens with multiple sclerosis; naive thymus-derived CD4-positive, alpha-beta T cell"]
Description
Labels
  • accession: ENCSR794KUS
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000895/
  • biosample_summary: Homo sapiens with multiple sclerosis; naive thymus-derived CD4-positive, alpha-beta T cell
  • date_created: 2022-02-07T22:20:22.167980+00:00
  • date_released: 2022-02-25
  • doi: 10.17989/ENCSR794KUS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: with multiple sclerosis
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR794KUS float

DNase-seq_ENCSR794KUS
DNase-seq ENCSR794KUS [biosample_summary="Homo sapiens with multiple sclerosis; naive thymus-derived CD4-positive, alpha-beta T cell"]
 HISTOGRAM FOR DNase-seq_ENCSR794KUS [0.0814, 45]
n
13,166,848
mean
3.51
sd
4.83

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 131668480.41% 64345
chr1 1339730 0.54% 6487
chr2 971868 0.40% 4775
chr3 753852 0.38% 3657
chr4 497689 0.26% 2448
chr5 609552 0.34% 2952
chr6 806267 0.47% 3831
chr7 630538 0.40% 3064
chr8 503283 0.35% 2501
chr9 513838 0.37% 2557
chr10 596119 0.45% 2926
chr11 659469 0.49% 3239
chr12 680761 0.51% 3363
chr13 297127 0.26% 1435
chr14 472756 0.44% 2315
chr15 417549 0.41% 2089
chr16 481069 0.53% 2354
chr17 737842 0.89% 3600
chr18 226260 0.28% 1118
chr19 699590 1.19% 3360
chr20 360914 0.56% 1799
chr21 168137 0.36% 811
chr22 294553 0.58% 1479
chrX 426695 0.27% 2087
chrY 21390 0.04% 98
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 64345 3 880 204.63 200
global segment-length histogram

Files

Filename Size md5
ENCFF050GDF.bed.gz 711.49 KB d3650df5423fc271e6b9880ea4cc78dc
ENCFF050GDF.tabix.bed.gz 656.35 KB 95da4d54a7bee55f2e70f9602d3ee956
ENCFF050GDF.tabix.bed.gz.tbi 283.14 KB 4336f1d18c136d988d78ea458e864e4c
genomic_resource.yaml 1.33 KB e40f2d78d7f022a88a89ab2a033e5f97
statistics/