Resource

Id DNase-seq/ENCSR789VGQcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR789VGQ [biosample_summary="Homo sapiens MCF 10A"]
Description
Labels
  • accession: ENCSR789VGQ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0001200/
  • biosample_summary: Homo sapiens MCF 10A
  • date_created: 2017-11-01T23:57:38.766242+00:00
  • date_released: 2018-01-18
  • doi: 10.17989/ENCSR789VGQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR789VGQ float

DNase-seq_ENCSR789VGQ
DNase-seq ENCSR789VGQ [biosample_summary="Homo sapiens MCF 10A"]
 HISTOGRAM FOR DNase-seq_ENCSR789VGQ [0.0353, 36.8]
n
41,849,023
mean
1.56
sd
2.06

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 418490231.30% 219306
chr1 4066527 1.63% 20984
chr2 3409116 1.41% 18034
chr3 2729491 1.38% 14384
chr4 2354702 1.24% 12547
chr5 2569968 1.42% 13417
chr6 2582820 1.51% 13479
chr7 2037316 1.28% 10707
chr8 2121739 1.46% 11102
chr9 1734072 1.25% 9159
chr10 1996451 1.49% 10513
chr11 1946547 1.44% 10232
chr12 2057190 1.54% 10726
chr13 1142953 1.00% 6077
chr14 1295983 1.21% 6832
chr15 1261853 1.24% 6596
chr16 1224353 1.36% 6407
chr17 1596195 1.92% 8145
chr18 970372 1.21% 5151
chr19 1171299 2.00% 5934
chr20 1046628 1.62% 5489
chr21 501464 1.07% 2625
chr22 646285 1.27% 3318
chrX 1384661 0.89% 7440
chrY 1038 <0.01% 8
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 219306 1 960 190.82 180
global segment-length histogram

Files

Filename Size md5
ENCFF916CRB.bed.gz 2.34 MB 3073903aafabf8e6c79037df95e24a17
ENCFF916CRB.tabix.bed.gz 2.14 MB a3b8950b8ecbfaa54075e218f9d4ecc3
ENCFF916CRB.tabix.bed.gz.tbi 698.14 KB 8403b141e0101f5996c9d1f4ee48d1db
genomic_resource.yaml 1.07 KB df3d824403aed367b5b4fdf26bfccd64
statistics/