Resource

Id DNase-seq/ENCSR788IZLcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR788IZL [biosample_summary="Homo sapiens breast epithelium tissue male adult (54 years)"]
Description
Labels
  • accession: ENCSR788IZL
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0008367/
  • biosample_summary: Homo sapiens breast epithelium tissue male adult (54 years)
  • date_created: 2019-10-08T17:48:09.068769+00:00
  • date_released: 2019-11-08
  • doi: 10.17989/ENCSR788IZL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (54 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR788IZL float

DNase-seq_ENCSR788IZL
DNase-seq ENCSR788IZL [biosample_summary="Homo sapiens breast epithelium tissue male adult (54 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR788IZL [8, 1.24e+03]
n
4,572,570
mean
98.7
sd
71.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 45725700.14% 30456
chr1 479563 0.19% 3196
chr2 312609 0.13% 2082
chr3 260134 0.13% 1732
chr4 159460 0.08% 1060
chr5 204741 0.11% 1365
chr6 253179 0.15% 1686
chr7 214442 0.13% 1426
chr8 173218 0.12% 1155
chr9 197390 0.14% 1317
chr10 193930 0.14% 1291
chr11 258476 0.19% 1724
chr12 234699 0.18% 1563
chr13 87522 0.08% 583
chr14 150577 0.14% 1003
chr15 149052 0.15% 994
chr16 191076 0.21% 1273
chr17 270431 0.32% 1797
chr18 73023 0.09% 486
chr19 297229 0.51% 1980
chr20 128550 0.20% 855
chr21 54081 0.12% 361
chr22 110393 0.22% 734
chrX 112945 0.07% 754
chrY 5850 0.01% 39
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 30456 18 430 150.14 150
global segment-length histogram

Files

Filename Size md5
ENCFF693RDT.bed.gz 309.98 KB ab48d11896ccdfff60ffa6d6896996c5
ENCFF693RDT.tabix.bed.gz 263.72 KB 38319240adb2ba72ae0364d75c2883aa
ENCFF693RDT.tabix.bed.gz.tbi 179.84 KB 197ab0ba0a501e869471b0b8d06f5596
genomic_resource.yaml 1.41 KB b2ed3dc79ac59ab40eeb3f5b390629cf
statistics/