Resource

Id DNase-seq/ENCSR787ERPcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR787ERP [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell female adult (25 years)"]
Description
Labels
  • accession: ENCSR787ERP
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000895/
  • biosample_summary: Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell female adult (25 years)
  • date_created: 2020-04-11T19:13:43.470419+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR787ERP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (25 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR787ERP float

DNase-seq_ENCSR787ERP
DNase-seq ENCSR787ERP [biosample_summary="Homo sapiens naive thymus-derived CD4-positive, alpha-beta T cell female adult (25 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR787ERP [0.38, 87.7]
n
7,184,227
mean
10.7
sd
11.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 71842270.22% 37394
chr1 727462 0.29% 3798
chr2 491107 0.20% 2569
chr3 379597 0.19% 1984
chr4 237802 0.13% 1228
chr5 313808 0.17% 1627
chr6 405706 0.24% 2108
chr7 339545 0.21% 1772
chr8 253276 0.17% 1331
chr9 287224 0.21% 1501
chr10 309268 0.23% 1611
chr11 385207 0.29% 2009
chr12 365855 0.27% 1880
chr13 140021 0.12% 725
chr14 259241 0.24% 1347
chr15 226779 0.22% 1209
chr16 298547 0.33% 1563
chr17 453682 0.54% 2347
chr18 107034 0.13% 554
chr19 519742 0.89% 2615
chr20 205987 0.32% 1100
chr21 85530 0.18% 461
chr22 176885 0.35% 944
chrX 214922 0.14% 1111
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 37394 4 660 192.12 180
global segment-length histogram

Files

Filename Size md5
ENCFF464HKL.bed.gz 417.82 KB bfb12c835791b7c72e97289ccb7924b7
ENCFF464HKL.tabix.bed.gz 378.56 KB 3bde0b963bd3acaf32e4760789d34ff7
ENCFF464HKL.tabix.bed.gz.tbi 193.85 KB 5f8d4237352b81bb1a5a158ce41550c4
genomic_resource.yaml 1.94 KB d3de770af741ef13524ffda64dd85e47
statistics/