Resource
| Id | DNase-seq/ENCSR785ZUI |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR785ZUI [biosample_summary="Homo sapiens WTC11"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF715YXX|/files/ENCFF715YXX/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.35. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR785ZUI | float |
DNase-seq_ENCSR785ZUI |
DNase-seq ENCSR785ZUI [biosample_summary="Homo sapiens WTC11"]
|
 |
[0.0565, 26] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 22400258 | 0.70% | 115998 |
| chr1 | 2038423 | 0.82% | 10408 |
| chr2 | 1600254 | 0.66% | 8404 |
| chr3 | 1195828 | 0.60% | 6274 |
| chr4 | 986255 | 0.52% | 5176 |
| chr5 | 1132875 | 0.62% | 5880 |
| chr6 | 1142468 | 0.67% | 6001 |
| chr7 | 1172286 | 0.74% | 6061 |
| chr8 | 930449 | 0.64% | 4877 |
| chr9 | 997720 | 0.72% | 5162 |
| chr10 | 1093496 | 0.82% | 5720 |
| chr11 | 1255011 | 0.93% | 6456 |
| chr12 | 1013004 | 0.76% | 5252 |
| chr13 | 518436 | 0.45% | 2751 |
| chr14 | 727249 | 0.68% | 3747 |
| chr15 | 755485 | 0.74% | 3902 |
| chr16 | 792692 | 0.88% | 4094 |
| chr17 | 1205320 | 1.45% | 6103 |
| chr18 | 435653 | 0.54% | 2338 |
| chr19 | 1171751 | 2.00% | 5802 |
| chr20 | 700772 | 1.09% | 3579 |
| chr21 | 289212 | 0.62% | 1471 |
| chr22 | 563919 | 1.11% | 2886 |
| chrX | 660520 | 0.42% | 3533 |
| chrY | 21180 | 0.04% | 121 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 115998 | 1 | 1060 | 193.11 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF854DSG.bed.gz | 1.24 MB | 0d438b5c259ff2fab4ddb5f5d4adb616 |
| ENCFF854DSG.tabix.bed.gz | 1.14 MB | 0c0b13c3063452db333a65e62658204d |
| ENCFF854DSG.tabix.bed.gz.tbi | 431.87 KB | cdb030e36cff81b44d699e66237e3c96 |
| genomic_resource.yaml | 1.9 KB | c573b413afa5721a4b70de962ba8d454 |
| statistics/ |