Resource

Id DNase-seq/ENCSR785BDQcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR785BDQ [biosample_summary="Homo sapiens glomerular visceral epithelial cell child (3 years)"]
Description
Labels
  • accession: ENCSR785BDQ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000653/
  • biosample_summary: Homo sapiens glomerular visceral epithelial cell child (3 years)
  • date_created: 2014-09-26T06:22:09.696945+00:00
  • date_released: 2016-05-11
  • doi: 10.17989/ENCSR785BDQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: child (3 years)
  • status: released
  • submitter_comment: Replicates 1,1 and 3,1 are the preferred samples

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR785BDQ float

DNase-seq_ENCSR785BDQ
DNase-seq ENCSR785BDQ [biosample_summary="Homo sapiens glomerular visceral epithelial cell child (3 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR785BDQ [4, 150]
n
33,694,420
mean
67.6
sd
35.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 336944201.05% 236571
chr1 3183110 1.28% 22462
chr2 2726050 1.13% 19105
chr3 2159140 1.09% 15059
chr4 1868380 0.98% 13051
chr5 2020030 1.11% 14081
chr6 2127230 1.25% 14889
chr7 1658470 1.04% 11727
chr8 1554700 1.07% 10858
chr9 1507950 1.09% 10575
chr10 1564490 1.17% 10986
chr11 1594160 1.18% 11139
chr12 1601010 1.20% 11212
chr13 913200 0.80% 6360
chr14 1058430 0.99% 7380
chr15 1091820 1.07% 7737
chr16 944460 1.05% 6698
chr17 1450390 1.74% 10336
chr18 751170 0.93% 5221
chr19 1085870 1.85% 7838
chr20 862340 1.34% 6027
chr21 408860 0.88% 2834
chr22 586100 1.15% 4096
chrX 890180 0.57% 6236
chrY 86880 0.15% 664
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 236571 10 380 142.43 150
global segment-length histogram

Files

Filename Size md5
ENCFF089THB.bed.gz 2.03 MB 4219dd23661f2298c7267007840cc1bd
ENCFF089THB.tabix.bed.gz 1.85 MB ceed5eff2ca2dd6028464705da844b4d
ENCFF089THB.tabix.bed.gz.tbi 656.23 KB b1864a4bdf93dd91dd0399e9c217cfee
genomic_resource.yaml 1.28 KB 542543feeddee743cdb3e6e04dc1b012
statistics/