Resource
| Id | DNase-seq/ENCSR783OCW |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR783OCW [biosample_summary="Homo sapiens esophagus squamous epithelium tissue male adult (37 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: peaks audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF104MIA|/files/ENCFF104MIA/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.19. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_internal_action: Released analysis {ENCAN980BLX|/analyses/ENCAN980BLX/} has in progress subobject document {d0a8e48b-825f-4d42-bf34-39d987729133|/documents/d0a8e48b-825f-4d42-bf34-39d987729133/} audit_internal_action: Released analysis {ENCAN980BLX|/analyses/ENCAN980BLX/} has in progress subobject document {b21acfaf-eb62-4738-8a9f-f1b6484dc440|/documents/b21acfaf-eb62-4738-8a9f-f1b6484dc440/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR783OCW | float |
DNase-seq_ENCSR783OCW |
DNase-seq ENCSR783OCW [biosample_summary="Homo sapiens esophagus squamous epithelium tissue male adult (37 years)"]
|
 |
[0.0354, 11.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 38521321 | 1.20% | 188841 |
| chr1 | 3389086 | 1.36% | 16302 |
| chr2 | 4071855 | 1.68% | 19663 |
| chr3 | 1972077 | 0.99% | 9584 |
| chr4 | 910809 | 0.48% | 4601 |
| chr5 | 2057698 | 1.13% | 10029 |
| chr6 | 1867375 | 1.09% | 9229 |
| chr7 | 2120326 | 1.33% | 10479 |
| chr8 | 1884682 | 1.30% | 9223 |
| chr9 | 1570461 | 1.13% | 7812 |
| chr10 | 2861193 | 2.14% | 13870 |
| chr11 | 2008524 | 1.49% | 9728 |
| chr12 | 1333297 | 1.00% | 6683 |
| chr13 | 879966 | 0.77% | 4477 |
| chr14 | 1262351 | 1.18% | 6231 |
| chr15 | 1631003 | 1.60% | 7963 |
| chr16 | 1462035 | 1.62% | 7472 |
| chr17 | 1414360 | 1.70% | 6961 |
| chr18 | 1184958 | 1.47% | 5866 |
| chr19 | 1152519 | 1.97% | 5640 |
| chr20 | 1446103 | 2.24% | 7097 |
| chr21 | 703791 | 1.51% | 3472 |
| chr22 | 1047083 | 2.06% | 4951 |
| chrX | 284216 | 0.18% | 1465 |
| chrY | 5553 | 0.01% | 43 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 188841 | 1 | 1076 | 203.99 | 193 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF839REP.bed.gz | 1.67 MB | 4ccd62e6e5dc17d3987e7cbce02c6c49 |
| ENCFF839REP.tabix.bed.gz | 1.6 MB | ab2ee27bbfcc7d580749454f3af0a6bc |
| ENCFF839REP.tabix.bed.gz.tbi | 195.07 KB | 13b15e55127646e4c979d0d9593e40a5 |
| genomic_resource.yaml | 2.51 KB | df036a0cc3034216e9da88759577bacd |
| statistics/ |