Resource

Id DNase-seq/ENCSR782XFYcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR782XFY [biosample_summary="Homo sapiens eye tissue embryo (56 days) and male embryo (76 days)"]
Description
Labels
  • accession: ENCSR782XFY
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000970/
  • biosample_summary: Homo sapiens eye tissue embryo (56 days) and male embryo (76 days)
  • date_created: 2014-06-20T23:13:57.861106+00:00
  • date_released: 2015-08-31
  • doi: 10.17989/ENCSR782XFY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: anisogenic
  • simple_biosample_summary: male embryo (76 days) embryo (56 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR782XFY float

DNase-seq_ENCSR782XFY
DNase-seq ENCSR782XFY [biosample_summary="Homo sapiens eye tissue embryo (56 days) and male embryo (76 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR782XFY [0.0202, 17.1]
n
58,114,108
mean
0.924
sd
1.19

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 581141081.81% 239923
chr1 5128740 2.06% 20478
chr2 4770005 1.97% 19762
chr3 3610642 1.82% 15101
chr4 3068579 1.61% 12818
chr5 3431137 1.89% 14028
chr6 3446677 2.02% 14050
chr7 3004512 1.89% 12509
chr8 2742058 1.89% 11480
chr9 2512183 1.82% 10433
chr10 2943222 2.20% 12110
chr11 2915261 2.16% 12168
chr12 2725410 2.04% 11203
chr13 1721393 1.51% 7157
chr14 1889946 1.77% 7700
chr15 1825417 1.79% 7517
chr16 1908145 2.11% 7846
chr17 2416182 2.90% 9777
chr18 1498132 1.86% 6164
chr19 1732430 2.96% 7170
chr20 1537017 2.39% 6347
chr21 679418 1.45% 2861
chr22 978686 1.93% 4130
chrX 1575657 1.01% 6863
chrY 53259 0.09% 251
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 239923 1 1460 242.22 220
global segment-length histogram

Files

Filename Size md5
ENCFF701HKM.bed.gz 2.48 MB ad17991d652515d50996754a73a57077
ENCFF701HKM.tabix.bed.gz 2.34 MB 4a83230b515cf6aa6930b1fed03b4417
ENCFF701HKM.tabix.bed.gz.tbi 691.91 KB 9edfe78c92143b91cbc2af88729abbb4
genomic_resource.yaml 1.29 KB cc9005bcd9bdfe7f14d5ef56d9a7f1e8
statistics/