Resource

Id DNase-seq/ENCSR781TYEcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR781TYE [biosample_summary="Homo sapiens PC-9"]
Description
Labels
  • accession: ENCSR781TYE
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002847/
  • biosample_summary: Homo sapiens PC-9
  • date_created: 2021-08-31T22:37:23.991451+00:00
  • date_released: 2022-08-09
  • doi: 10.17989/ENCSR781TYE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR781TYE float

DNase-seq_ENCSR781TYE

DNase-seq ENCSR781TYE [biosample_summary="Homo sapiens PC-9"]
HISTOGRAM FOR DNase-seq_ENCSR781TYE [0.0822, 75.5]
n
22,492,427
mean
3.5
sd
4.78

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 224924270.70% 108380
chr1 2246135 0.90% 10675
chr2 1755967 0.73% 8498
chr3 1462417 0.74% 7063
chr4 928163 0.49% 4584
chr5 1132054 0.62% 5507
chr6 1285679 0.75% 6212
chr7 1196737 0.75% 5721
chr8 922761 0.64% 4477
chr9 987204 0.71% 4760
chr10 1005798 0.75% 4867
chr11 1150293 0.85% 5589
chr12 1080904 0.81% 5190
chr13 469556 0.41% 2301
chr14 683686 0.64% 3320
chr15 733919 0.72% 3575
chr16 856755 0.95% 4064
chr17 1164930 1.40% 5473
chr18 380629 0.47% 1912
chr19 1011109 1.72% 4753
chr20 678567 1.05% 3252
chr21 227098 0.49% 1109
chr22 530111 1.04% 2509
chrX 601815 0.39% 2968
chrY 140 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 108380 4 860 207.53 200
global segment-length histogram

Files

Filename Size md5
ENCFF424GSV.bed.gz 1.17 MB 1624c6a5feb29720bf839634360bf599
ENCFF424GSV.tabix.bed.gz 1.07 MB c5844080a13c106aff6d23af69bf74ef
ENCFF424GSV.tabix.bed.gz.tbi 427.23 KB d409b4803b85b550d9b0c6eade900db5
genomic_resource.yaml 1.06 KB b95384587e218c1909c15c4c0f237601
statistics/