type: position_score
table:
  filename: ENCFF953XXF.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: DNase-seq_ENCSR780ABS
  column_index: 3
  type: float
  desc: 'DNase-seq ENCSR780ABS [biosample_summary="Homo sapiens activated T-helper 2 cell\ \ male adult (35 years) treated with 5 \u03BCg/mL Interferon-gamma antibody for\ \ 36 hours, anti-CD3 and anti-CD28 coated beads for 24 hours, 10 ng/mL Interleukin-2\ \ for 14 days, anti-CD3 and anti-CD28 coated beads for 14 days, 100 ng/mL Interleukin-4\ \ for 36 hours"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'DNase-seq ENCSR780ABS [biosample_summary="Homo sapiens activated T-helper 2 cell\ \ male adult (35 years) treated with 5 \u03BCg/mL Interferon-gamma antibody for\ \ 36 hours, anti-CD3 and anti-CD28 coated beads for 24 hours, 10 ng/mL Interleukin-2\ \ for 14 days, anti-CD3 and anti-CD28 coated beads for 14 days, 100 ng/mL Interleukin-4\ \ for 36 hours"]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1\n\n**summary**:\
    \ male adult (35 years) treated with 5 \u03BCg/mL Interferon-gamma antibody for\
    \ 36 hours, anti-CD3 and anti-CD28 coated beads for 24 hours, 10 ng/mL Interleukin-2\
    \ for 14 days, anti-CD3 and anti-CD28 coated beads for 14 days, 100 ng/mL Interleukin-4\
    \ for 36 hours\n\n**output\\_type**: peaks\n\n**audit\\_warning**: Signal Portion\
    \ of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction\
    \ of reads in peaks metric. ENCODE processed alignment files {ENCFF612MMX|/files/ENCFF612MMX/}\
    \ processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/})\
    \ for GRCh38 assembly  have a SPOT1 score of 0.39. According to ENCODE standards,\
    \ SPOT1 score of 0.4 or higher is considered a product of high quality data. Any\
    \ sample with a SPOT1 score <0.3 should be targeted for replacement with a higher\
    \ quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable\
    \ SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to\
    \ find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/})"
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR780ABS
    status: released
    assay_term_name: DNase-seq
    simple_biosample_summary: "male adult (35 years) treated with 5 \u03BCg/mL Interferon-gamma\
      \ antibody for 36 hours, anti-CD3 and anti-CD28 coated beads for 24 hours, 10\
      \ ng/mL Interleukin-2 for 14 days, anti-CD3 and anti-CD28 coated beads for 14\
      \ days, 100 ng/mL Interleukin-4 for 36 hours"
    biosample_summary: "Homo sapiens activated T-helper 2 cell male adult (35 years)\
      \ treated with 5 \u03BCg/mL Interferon-gamma antibody for 36 hours, anti-CD3\
      \ and anti-CD28 coated beads for 24 hours, 10 ng/mL Interleukin-2 for 14 days,\
      \ anti-CD3 and anti-CD28 coated beads for 14 days, 100 ng/mL Interleukin-4 for\
      \ 36 hours"
    replication_type: unreplicated
    biosample_ontology: /biosample-types/primary_cell_NTR_0000634/
    perturbed: false
    doi: 10.17989/ENCSR780ABS
    date_created: '2021-08-24T22:56:05.909015+00:00'
    date_released: '2021-11-04'
    submitter_comment: ''