Resource

Id DNase-seq/ENCSR778DWGcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR778DWG [biosample_summary="Homo sapiens activated naive CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours"]
Description
Labels
  • accession: ENCSR778DWG
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000497/
  • biosample_summary: Homo sapiens activated naive CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours
  • date_created: 2020-04-16T03:32:08.432977+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR778DWG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours
  • status: released
  • submitter_comment: The biosample ontology on this experiment was previously NTR:0000496 (CD4-positive naive resting alpha-beta T cell). It has been updated to NTR:0000497 (activated CD4 positive, naive alpha-beta T cell) on 11/04/21.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR778DWG float

DNase-seq_ENCSR778DWG
DNase-seq ENCSR778DWG [biosample_summary="Homo sapiens activated naive CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR778DWG [0.375, 71.9]
n
7,484,712
mean
7.17
sd
7.43

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 74847120.23% 40095
chr1 775118 0.31% 4139
chr2 514782 0.21% 2751
chr3 410969 0.21% 2171
chr4 260933 0.14% 1377
chr5 327166 0.18% 1761
chr6 432576 0.25% 2314
chr7 337505 0.21% 1829
chr8 267633 0.18% 1464
chr9 303348 0.22% 1630
chr10 328145 0.25% 1782
chr11 385918 0.29% 2072
chr12 383310 0.29% 2046
chr13 144692 0.13% 767
chr14 262748 0.25% 1398
chr15 246959 0.24% 1343
chr16 306675 0.34% 1638
chr17 462049 0.55% 2474
chr18 120704 0.15% 637
chr19 521921 0.89% 2754
chr20 206300 0.32% 1126
chr21 86661 0.19% 465
chr22 181033 0.36% 988
chrX 211719 0.14% 1138
chrY 5848 0.01% 31
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 40095 1 820 186.67 180
global segment-length histogram

Files

Filename Size md5
ENCFF784JNN.bed.gz 445.21 KB dca207759e1b45daff0aefe82994a3ce
ENCFF784JNN.tabix.bed.gz 404.33 KB 0f5556e751498db6f5dcb12128a3e9e6
ENCFF784JNN.tabix.bed.gz.tbi 203.46 KB 8a66dc86710d7eb5ca8039a510744715
genomic_resource.yaml 2.63 KB 6bd98f7208264b629194463c0b7e320e
statistics/