Resource

Id DNase-seq/ENCSR777USEcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR777USE [biosample_summary="Homo sapiens thymus tissue female embryo (147 days)"]
Description
Labels
  • accession: ENCSR777USE
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002370/
  • biosample_summary: Homo sapiens thymus tissue female embryo (147 days)
  • date_created: 2015-09-16T21:43:03.350924+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR777USE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (147 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR777USE float

DNase-seq_ENCSR777USE
DNase-seq ENCSR777USE [biosample_summary="Homo sapiens thymus tissue female embryo (147 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR777USE [4, 961]
n
9,607,312
mean
52.3
sd
54.1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 96073120.30% 63775
chr1 934770 0.38% 6200
chr2 771779 0.32% 5127
chr3 641985 0.32% 4259
chr4 462711 0.24% 3075
chr5 500319 0.28% 3322
chr6 596480 0.35% 3950
chr7 473500 0.30% 3145
chr8 404374 0.28% 2683
chr9 379941 0.27% 2520
chr10 451214 0.34% 2996
chr11 466332 0.35% 3095
chr12 497811 0.37% 3309
chr13 260698 0.23% 1729
chr14 311895 0.29% 2072
chr15 323235 0.32% 2141
chr16 317385 0.35% 2109
chr17 429713 0.52% 2856
chr18 194165 0.24% 1288
chr19 366241 0.62% 2433
chr20 240248 0.37% 1596
chr21 118935 0.25% 791
chr22 179537 0.35% 1194
chrX 281044 0.18% 1865
chrY 3000 0.01% 20
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 63775 17 450 150.64 150
global segment-length histogram

Files

Filename Size md5
ENCFF959FMP.bed.gz 621.22 KB e2c72da79ad2a312d96ff36db80c4e8b
ENCFF959FMP.tabix.bed.gz 532.61 KB c2a4585dc5112f74842ff73ac34a7ad8
ENCFF959FMP.tabix.bed.gz.tbi 316.2 KB daeda54cb3c4ac50ac4f95a0da5630e3
genomic_resource.yaml 1.39 KB a67b7f37568a187b8e5fc35b69312348
statistics/