Resource

Id DNase-seq/ENCSR776BTOcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR776BTO [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta T cell male adult (21 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days"]
Description
Labels
  • accession: ENCSR776BTO
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000906/
  • biosample_summary: Homo sapiens activated CD8-positive, alpha-beta T cell male adult (21 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days
  • date_created: 2019-08-24T00:09:41.050710+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR776BTO
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (21 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR776BTO float

DNase-seq_ENCSR776BTO
DNase-seq ENCSR776BTO [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta T cell male adult (21 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days"]
 HISTOGRAM FOR DNase-seq_ENCSR776BTO [0.033, 43.7]
n
20,293,866
mean
2.68
sd
4.52

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 202938660.63% 105893
chr1 1975405 0.79% 10259
chr2 1660317 0.69% 8802
chr3 1154869 0.58% 6007
chr4 680921 0.36% 3541
chr5 937682 0.52% 4941
chr6 1214929 0.71% 6320
chr7 965233 0.61% 5097
chr8 742202 0.51% 3906
chr9 832472 0.60% 4375
chr10 1055752 0.79% 5553
chr11 1032412 0.76% 5371
chr12 926215 0.69% 4806
chr13 443430 0.39% 2362
chr14 732362 0.68% 3853
chr15 772183 0.76% 4075
chr16 733964 0.81% 3770
chr17 1092476 1.31% 5550
chr18 357869 0.45% 1895
chr19 1037573 1.77% 5222
chr20 604687 0.94% 3190
chr21 273773 0.59% 1419
chr22 498465 0.98% 2614
chrX 547496 0.35% 2853
chrY 21179 0.04% 112
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 105893 1 900 191.65 180
global segment-length histogram

Files

Filename Size md5
ENCFF596UGI.bed.gz 1.15 MB 60e0a67c611092638d7228a84345c79a
ENCFF596UGI.tabix.bed.gz 1.05 MB ffa85aeb196da845beb64ee41b1f4f19
ENCFF596UGI.tabix.bed.gz.tbi 339.13 KB 8cba24c5a19f15bcaf42ba1926296dea
genomic_resource.yaml 1.77 KB 32305cc6dc6c19605bb7219c1deb6c7d
statistics/