Resource
| Id | DNase-seq/ENCSR770JCP |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR770JCP [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (75 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (75 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF852ZQP|/files/ENCFF852ZQP/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.32. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR770JCP | float |
DNase-seq_ENCSR770JCP |
DNase-seq ENCSR770JCP [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (75 years)"]
|
 |
[0.0803, 10.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 9904683 | 0.31% | 53717 |
| chr1 | 934114 | 0.38% | 5047 |
| chr2 | 748156 | 0.31% | 4150 |
| chr3 | 557756 | 0.28% | 3036 |
| chr4 | 347493 | 0.18% | 1880 |
| chr5 | 473119 | 0.26% | 2599 |
| chr6 | 490150 | 0.29% | 2697 |
| chr7 | 474420 | 0.30% | 2596 |
| chr8 | 413313 | 0.28% | 2289 |
| chr9 | 462768 | 0.33% | 2502 |
| chr10 | 486763 | 0.36% | 2653 |
| chr11 | 587456 | 0.43% | 3181 |
| chr12 | 466557 | 0.35% | 2460 |
| chr13 | 191902 | 0.17% | 1038 |
| chr14 | 318558 | 0.30% | 1737 |
| chr15 | 339773 | 0.33% | 1898 |
| chr16 | 394573 | 0.44% | 2109 |
| chr17 | 544172 | 0.65% | 2903 |
| chr18 | 174174 | 0.22% | 994 |
| chr19 | 575694 | 0.98% | 2892 |
| chr20 | 313112 | 0.49% | 1719 |
| chr21 | 108790 | 0.23% | 605 |
| chr22 | 296836 | 0.58% | 1654 |
| chrX | 204824 | 0.13% | 1076 |
| chrY | 210 | <0.01% | 2 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 53717 | 2 | 900 | 184.39 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF211HMH.bed.gz | 586.23 KB | 56decdedcd5205429239f3ebc07fe1ae |
| ENCFF211HMH.tabix.bed.gz | 531.13 KB | 2117f7b1b333b3ea83fc32f7f2183263 |
| ENCFF211HMH.tabix.bed.gz.tbi | 255.25 KB | a45c6d3129533d900eb849c26ef3b522 |
| genomic_resource.yaml | 2.08 KB | b2b529e4e9158a23b39ae049af8babe4 |
| statistics/ |