Resource

Id DNase-seq/ENCSR769OIGcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR769OIG [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell male adult (38 years)"]
Description
Labels
  • accession: ENCSR769OIG
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000624/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta T cell male adult (38 years)
  • date_created: 2020-04-19T18:36:54.754917+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR769OIG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR769OIG float

DNase-seq_ENCSR769OIG
DNase-seq ENCSR769OIG [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell male adult (38 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR769OIG [0.0866, 97.6]
n
10,154,921
mean
6.65
sd
10.1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 101549210.32% 55216
chr1 1021564 0.41% 5544
chr2 703643 0.29% 3858
chr3 543979 0.27% 2957
chr4 348785 0.18% 1885
chr5 452790 0.25% 2437
chr6 588775 0.34% 3176
chr7 458939 0.29% 2503
chr8 377003 0.26% 2060
chr9 398761 0.29% 2177
chr10 445742 0.33% 2449
chr11 516577 0.38% 2844
chr12 520425 0.39% 2821
chr13 207654 0.18% 1120
chr14 363687 0.34% 1979
chr15 328958 0.32% 1815
chr16 426515 0.47% 2325
chr17 631453 0.76% 3387
chr18 153761 0.19% 842
chr19 672825 1.15% 3567
chr20 283895 0.44% 1560
chr21 127363 0.27% 691
chr22 254446 0.50% 1402
chrX 315389 0.20% 1751
chrY 11992 0.02% 66
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 55216 2 760 183.91 180
global segment-length histogram

Files

Filename Size md5
ENCFF707MRS.bed.gz 628.63 KB 2db5064c3fd7f928ca723f1c0fbf713d
ENCFF707MRS.tabix.bed.gz 571.61 KB 227de1f4e78efad53de51437460731cb
ENCFF707MRS.tabix.bed.gz.tbi 247.88 KB 49ff7668f8a1dce76a53d7a51714488f
genomic_resource.yaml 1.26 KB c6311f9d0e5cf87a89ecf168aa0b8c69
statistics/