Resource

Id DNase-seq/ENCSR768AWYcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR768AWY [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours"]
Description
Labels
  • accession: ENCSR768AWY
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000896/
  • biosample_summary: Homo sapiens activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours
  • date_created: 2020-04-20T23:45:48.489771+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR768AWY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR768AWY float

DNase-seq_ENCSR768AWY
DNase-seq ENCSR768AWY [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR768AWY [0.254, 22.5]
n
7,151,940
mean
3.75
sd
2.75

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 71519400.22% 32679
chr1 735801 0.30% 3301
chr2 481786 0.20% 2206
chr3 385030 0.19% 1745
chr4 243494 0.13% 1098
chr5 308761 0.17% 1410
chr6 425309 0.25% 1906
chr7 325820 0.20% 1516
chr8 255946 0.18% 1219
chr9 297437 0.21% 1354
chr10 319644 0.24% 1447
chr11 368155 0.27% 1700
chr12 381704 0.29% 1713
chr13 135916 0.12% 611
chr14 244141 0.23% 1092
chr15 229949 0.23% 1061
chr16 307024 0.34% 1421
chr17 446407 0.54% 2076
chr18 102917 0.13% 477
chr19 504093 0.86% 2266
chr20 193878 0.30% 932
chr21 77154 0.17% 374
chr22 179392 0.35% 843
chrX 194205 0.12% 878
chrY 7977 0.01% 33
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 32679 1 920 218.85 200
global segment-length histogram

Files

Filename Size md5
ENCFF744LHU.bed.gz 351.38 KB 01c5714a14bb228178728b0bf4bd4d7a
ENCFF744LHU.tabix.bed.gz 323.92 KB 2d0e9a0806f435e0d74a59d8c958818d
ENCFF744LHU.tabix.bed.gz.tbi 175.18 KB 2d5e361ddec8a4ad972e0c5628acb413
genomic_resource.yaml 2.4 KB 8964ac42393e6c50d5e0e16691274895
statistics/