Resource

Id DNase-seq/ENCSR763AKEcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR763AKE [biosample_summary="Homo sapiens transverse colon tissue female adult (53 years)"]
Description
Labels
  • accession: ENCSR763AKE
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001157/
  • biosample_summary: Homo sapiens transverse colon tissue female adult (53 years)
  • date_created: 2019-07-29T20:41:32.310904+00:00
  • date_released: 2019-11-08
  • doi: 10.17989/ENCSR763AKE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR763AKE float

DNase-seq_ENCSR763AKE
DNase-seq ENCSR763AKE [biosample_summary="Homo sapiens transverse colon tissue female adult (53 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR763AKE [5, 2.14e+04]
n
14,496,200
mean
161
sd
244

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 144962000.45% 96517
chr1 1436000 0.58% 9563
chr2 1101392 0.45% 7327
chr3 842682 0.42% 5613
chr4 605589 0.32% 4033
chr5 693006 0.38% 4613
chr6 836864 0.49% 5576
chr7 700473 0.44% 4665
chr8 597575 0.41% 3977
chr9 634834 0.46% 4229
chr10 676808 0.51% 4504
chr11 773882 0.57% 5156
chr12 712097 0.53% 4741
chr13 313054 0.27% 2087
chr14 470417 0.44% 3130
chr15 482488 0.47% 3216
chr16 576090 0.64% 3828
chr17 777489 0.93% 5182
chr18 279056 0.35% 1858
chr19 692729 1.18% 4614
chr20 408853 0.63% 2722
chr21 173046 0.37% 1148
chr22 331930 0.65% 2208
chrX 379096 0.24% 2522
chrY 750 <0.01% 5
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 96517 29 450 150.19 150
global segment-length histogram

Files

Filename Size md5
ENCFF450HVI.bed.gz 957.96 KB 322de1894e5fda40a2fda2bd1399dabc
ENCFF450HVI.tabix.bed.gz 822.59 KB 6dfa6d2818588affea88fc29d4ecb464
ENCFF450HVI.tabix.bed.gz.tbi 391.31 KB 3ab9294cd5930a1b76e735397273f939
genomic_resource.yaml 1.41 KB 160c0911e0f3b8d39388a443c658d7c3
statistics/