Resource

Id DNase-seq/ENCSR762FCXcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR762FCX [biosample_summary="Homo sapiens large intestine tissue male embryo (91 days)"]
Description
Labels
  • accession: ENCSR762FCX
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000059/
  • biosample_summary: Homo sapiens large intestine tissue male embryo (91 days)
  • date_created: 2015-09-16T21:42:20.093852+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR762FCX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (91 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR762FCX float

DNase-seq_ENCSR762FCX
DNase-seq ENCSR762FCX [biosample_summary="Homo sapiens large intestine tissue male embryo (91 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR762FCX [0.385, 15.6]
n
6,717,480
mean
3.54
sd
2.53

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 67174800.21% 33579
chr1 627157 0.25% 3152
chr2 522930 0.22% 2593
chr3 419127 0.21% 2110
chr4 321889 0.17% 1623
chr5 332408 0.18% 1683
chr6 400976 0.23% 2006
chr7 335477 0.21% 1708
chr8 280202 0.19% 1436
chr9 269931 0.20% 1381
chr10 308902 0.23% 1569
chr11 341748 0.25% 1704
chr12 350898 0.26% 1751
chr13 163706 0.14% 809
chr14 223500 0.21% 1076
chr15 220955 0.22% 1089
chr16 244530 0.27% 1229
chr17 319979 0.38% 1561
chr18 136668 0.17% 692
chr19 376870 0.64% 1730
chr20 173688 0.27% 901
chr21 69686 0.15% 351
chr22 130473 0.26% 663
chrX 138318 0.09% 724
chrY 7462 0.01% 38
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 33579 1 800 200.05 188
global segment-length histogram

Files

Filename Size md5
ENCFF069ANX.bed.gz 349.7 KB 4e0c9ed04bdeb64d5e3e116999ae6e71
ENCFF069ANX.tabix.bed.gz 313.31 KB 880b02de9f3b0e343a021fb497d0c478
ENCFF069ANX.tabix.bed.gz.tbi 192.24 KB 6d9522317b0c8f7dca18e3123a983bb3
genomic_resource.yaml 1.84 KB 15f045d692a73d1ea0d5900d49fd727c
statistics/