Resource

Id DNase-seq/ENCSR761ZFAcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR761ZFA [biosample_summary="Homo sapiens right renal pelvis tissue male embryo (105 days)"]
Description
Labels
  • accession: ENCSR761ZFA
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0018116/
  • biosample_summary: Homo sapiens right renal pelvis tissue male embryo (105 days)
  • date_created: 2015-09-16T21:42:30.555591+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR761ZFA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (105 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR761ZFA float

DNase-seq_ENCSR761ZFA
DNase-seq ENCSR761ZFA [biosample_summary="Homo sapiens right renal pelvis tissue male embryo (105 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR761ZFA [3, 1.39e+03]
n
13,938,823
mean
49.2
sd
53.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 139388230.43% 92584
chr1 1239244 0.50% 8246
chr2 1138044 0.47% 7558
chr3 912977 0.46% 6057
chr4 766971 0.40% 5092
chr5 789839 0.44% 5242
chr6 867269 0.51% 5753
chr7 725240 0.46% 4809
chr8 632595 0.44% 4189
chr9 575192 0.42% 3824
chr10 693652 0.52% 4613
chr11 706015 0.52% 4691
chr12 689781 0.52% 4590
chr13 394523 0.34% 2620
chr14 440926 0.41% 2930
chr15 460630 0.45% 3059
chr16 433875 0.48% 2884
chr17 544744 0.65% 3616
chr18 349908 0.44% 2323
chr19 456531 0.78% 3041
chr20 350103 0.54% 2324
chr21 154462 0.33% 1028
chr22 232122 0.46% 1545
chrX 369480 0.24% 2453
chrY 14700 0.03% 97
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 92584 31 450 150.55 150
global segment-length histogram

Files

Filename Size md5
ENCFF360OCL.bed.gz 896.04 KB 1ea65ddb075feedca7de8616c14e9df1
ENCFF360OCL.tabix.bed.gz 768.06 KB 53d7e740451f894e90ef13d62ce96ab0
ENCFF360OCL.tabix.bed.gz.tbi 452.3 KB d3a7e4e596ba3f0676a7178bfc9d4353
genomic_resource.yaml 1.41 KB 0779c33a44fc7531728fc94b63aa7b1f
statistics/