Resource

Id DNase-seq/ENCSR757EPJcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR757EPJ [biosample_summary="Homo sapiens kidney tissue male embryo (85 days)"]
Description
Labels
  • accession: ENCSR757EPJ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002113/
  • biosample_summary: Homo sapiens kidney tissue male embryo (85 days)
  • date_created: 2015-09-16T21:42:50.910884+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR757EPJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (85 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR757EPJ float

DNase-seq_ENCSR757EPJ
DNase-seq ENCSR757EPJ [biosample_summary="Homo sapiens kidney tissue male embryo (85 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR757EPJ [0.163, 31.3]
n
16,913,718
mean
3.01
sd
3.54

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 169137180.53% 94147
chr1 1545625 0.62% 8577
chr2 1333175 0.55% 7438
chr3 1077733 0.54% 6045
chr4 878188 0.46% 4855
chr5 918651 0.51% 5132
chr6 1019152 0.60% 5650
chr7 855758 0.54% 4817
chr8 769285 0.53% 4300
chr9 730334 0.53% 4049
chr10 814623 0.61% 4585
chr11 881229 0.65% 4898
chr12 868038 0.65% 4812
chr13 449475 0.39% 2530
chr14 538605 0.50% 2969
chr15 552205 0.54% 3117
chr16 553627 0.61% 3090
chr17 700163 0.84% 3869
chr18 407076 0.51% 2290
chr19 665248 1.13% 3486
chr20 428319 0.66% 2401
chr21 186890 0.40% 1038
chr22 296218 0.58% 1667
chrX 428727 0.27% 2447
chrY 15374 0.03% 85
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 94147 1 1260 179.65 180
global segment-length histogram

Files

Filename Size md5
ENCFF989JWT.bed.gz 1002.83 KB b0408799f0fabf8f471cf5fde52815d3
ENCFF989JWT.tabix.bed.gz 901.36 KB e1d9c7de26722a475b9b0da42b4a5a85
ENCFF989JWT.tabix.bed.gz.tbi 452.38 KB a5e161ba2ea6cdf16d9e0a67305a8d7c
genomic_resource.yaml 1.81 KB f0c8bfea21d62bb60cea115c427b9c62
statistics/