Resource

Id DNase-seq/ENCSR756FQDcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR756FQD [biosample_summary="Homo sapiens with Cognitive impairment, Alzheimer''s disease; head of caudate nucleus tissue male adult (87 years)"]
Description
Labels
  • accession: ENCSR756FQD
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002626/
  • biosample_summary: Homo sapiens with Cognitive impairment, Alzheimer's disease; head of caudate nucleus tissue male adult (87 years)
  • date_created: 2020-12-15T22:21:53.410572+00:00
  • date_released: 2021-01-11
  • doi: 10.17989/ENCSR756FQD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (87 years) with Cognitive impairment, Alzheimer's disease
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR756FQD float

DNase-seq_ENCSR756FQD
DNase-seq ENCSR756FQD [biosample_summary="Homo sapiens with Cognitive impairment, Alzheimer''s disease; head of caudate nucleus tissue male adult (87 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR756FQD [0.0727, 34.4]
n
14,143,325
mean
2.95
sd
3.29

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 141433250.44% 76861
chr1 1360129 0.55% 7353
chr2 1023490 0.42% 5597
chr3 788924 0.40% 4254
chr4 558215 0.29% 2989
chr5 662893 0.37% 3602
chr6 736387 0.43% 3991
chr7 683704 0.43% 3747
chr8 605093 0.42% 3369
chr9 609705 0.44% 3322
chr10 667419 0.50% 3623
chr11 795021 0.59% 4346
chr12 705009 0.53% 3778
chr13 299146 0.26% 1642
chr14 462246 0.43% 2543
chr15 461358 0.45% 2515
chr16 582386 0.64% 3188
chr17 772968 0.93% 4157
chr18 263177 0.33% 1465
chr19 797214 1.36% 4158
chr20 424932 0.66% 2366
chr21 151623 0.32% 847
chr22 357421 0.70% 1952
chrX 361865 0.23% 1988
chrY 13000 0.02% 69
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 76861 1 800 184.01 180
global segment-length histogram

Files

Filename Size md5
ENCFF149FJP.bed.gz 852.43 KB 5d65bbee2cffe2a766024c5a32a14d37
ENCFF149FJP.tabix.bed.gz 775.49 KB 4afe420627fd8d828913595b4d8929f2
ENCFF149FJP.tabix.bed.gz.tbi 323.35 KB 83bd4f6659d211f47b7700ddec6579ac
genomic_resource.yaml 1.5 KB 04fa0e79a5b565c52f0379db72e19054
statistics/