Resource
| Id | DNase-seq/ENCSR753QKD |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR753QKD [biosample_summary="Homo sapiens muscle of arm tissue female embryo (98 days)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (98 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN010IRF|/analyses/ENCAN010IRF/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF197JIS|/files/ENCFF197JIS/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 30082983 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF240PRN|/files/ENCFF240PRN/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 29883489 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR753QKD | float |
DNase-seq_ENCSR753QKD |
DNase-seq ENCSR753QKD [biosample_summary="Homo sapiens muscle of arm tissue female embryo (98 days)"]
|
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[3, 1.04e+03] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 14477982 | 0.45% | 96328 |
| chr1 | 1282119 | 0.51% | 8523 |
| chr2 | 1192681 | 0.49% | 7938 |
| chr3 | 953224 | 0.48% | 6342 |
| chr4 | 786280 | 0.41% | 5230 |
| chr5 | 852501 | 0.47% | 5674 |
| chr6 | 904549 | 0.53% | 6008 |
| chr7 | 737065 | 0.46% | 4906 |
| chr8 | 702240 | 0.48% | 4675 |
| chr9 | 615101 | 0.44% | 4090 |
| chr10 | 705544 | 0.53% | 4697 |
| chr11 | 718180 | 0.53% | 4781 |
| chr12 | 703866 | 0.53% | 4689 |
| chr13 | 428600 | 0.37% | 2852 |
| chr14 | 464077 | 0.43% | 3084 |
| chr15 | 469026 | 0.46% | 3119 |
| chr16 | 429024 | 0.47% | 2856 |
| chr17 | 542955 | 0.65% | 3611 |
| chr18 | 327843 | 0.41% | 2183 |
| chr19 | 434137 | 0.74% | 2891 |
| chr20 | 360187 | 0.56% | 2400 |
| chr21 | 173306 | 0.37% | 1153 |
| chr22 | 227400 | 0.45% | 1514 |
| chrX | 467477 | 0.30% | 3108 |
| chrY | 600 | <0.01% | 4 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 96328 | 9 | 600 | 150.3 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF886DDL.bed.gz | 936.47 KB | a9e24643f21e8345bfd753a835f16644 |
| ENCFF886DDL.tabix.bed.gz | 803.5 KB | 07d0deb52dc7773a6959355e6af78fcc |
| ENCFF886DDL.tabix.bed.gz.tbi | 475.83 KB | 111efc93edae59468a42058f014c14bc |
| genomic_resource.yaml | 2.6 KB | 1111c2d5d2952db0cd15171c45464c53 |
| statistics/ |
