Resource

Id DNase-seq/ENCSR753QKDcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR753QKD [biosample_summary="Homo sapiens muscle of arm tissue female embryo (98 days)"]
Description
Labels
  • accession: ENCSR753QKD
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001499/
  • biosample_summary: Homo sapiens muscle of arm tissue female embryo (98 days)
  • date_created: 2015-09-16T21:42:40.169151+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR753QKD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (98 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR753QKD float

DNase-seq_ENCSR753QKD

DNase-seq ENCSR753QKD [biosample_summary="Homo sapiens muscle of arm tissue female embryo (98 days)"]
HISTOGRAM FOR DNase-seq_ENCSR753QKD [3, 1.04e+03]
n
14,477,982
mean
56.8
sd
67.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 144779820.45% 96328
chr1 1282119 0.51% 8523
chr2 1192681 0.49% 7938
chr3 953224 0.48% 6342
chr4 786280 0.41% 5230
chr5 852501 0.47% 5674
chr6 904549 0.53% 6008
chr7 737065 0.46% 4906
chr8 702240 0.48% 4675
chr9 615101 0.44% 4090
chr10 705544 0.53% 4697
chr11 718180 0.53% 4781
chr12 703866 0.53% 4689
chr13 428600 0.37% 2852
chr14 464077 0.43% 3084
chr15 469026 0.46% 3119
chr16 429024 0.47% 2856
chr17 542955 0.65% 3611
chr18 327843 0.41% 2183
chr19 434137 0.74% 2891
chr20 360187 0.56% 2400
chr21 173306 0.37% 1153
chr22 227400 0.45% 1514
chrX 467477 0.30% 3108
chrY 600 <0.01% 4
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 96328 9 600 150.3 150
global segment-length histogram

Files

Filename Size md5
ENCFF886DDL.bed.gz 936.47 KB a9e24643f21e8345bfd753a835f16644
ENCFF886DDL.tabix.bed.gz 803.5 KB 07d0deb52dc7773a6959355e6af78fcc
ENCFF886DDL.tabix.bed.gz.tbi 475.83 KB 111efc93edae59468a42058f014c14bc
genomic_resource.yaml 2.6 KB 1111c2d5d2952db0cd15171c45464c53
statistics/