Resource

Id DNase-seq/ENCSR752EPHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR752EPH [biosample_summary="Homo sapiens MCF 10A treated with 1 \u03BC\ M tamoxifen for 24 hours"]
Description
Labels
  • accession: ENCSR752EPH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0001200/
  • biosample_summary: Homo sapiens MCF 10A treated with 1 μM tamoxifen for 24 hours
  • date_created: 2017-11-01T23:57:38.627983+00:00
  • date_released: 2018-01-29
  • doi: 10.17989/ENCSR752EPH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: treated with 1.0 μM tamoxifen for 24.0 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR752EPH float

DNase-seq_ENCSR752EPH
DNase-seq ENCSR752EPH [biosample_summary="Homo sapiens MCF 10A treated with 1 \u03BC\ M tamoxifen for 24 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR752EPH [0.0304, 46.9]
n
53,257,654
mean
1.65
sd
2.68

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 532576541.66% 287149
chr1 5080610 2.04% 27181
chr2 4397965 1.82% 23835
chr3 3563675 1.80% 19303
chr4 3109287 1.63% 16987
chr5 3261991 1.80% 17563
chr6 3272729 1.92% 17594
chr7 2579985 1.62% 14042
chr8 2719058 1.87% 14670
chr9 2229345 1.61% 12015
chr10 2534345 1.89% 13738
chr11 2489104 1.84% 13379
chr12 2585038 1.94% 13957
chr13 1530640 1.34% 8329
chr14 1670600 1.56% 8996
chr15 1575078 1.54% 8430
chr16 1507184 1.67% 8109
chr17 1937630 2.33% 10254
chr18 1270892 1.58% 6951
chr19 1382734 2.36% 7215
chr20 1310381 2.03% 6990
chr21 645715 1.38% 3455
chr22 771453 1.52% 4133
chrX 1830387 1.17% 10010
chrY 1828 <0.01% 13
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 287149 1 1200 185.47 180
global segment-length histogram

Files

Filename Size md5
ENCFF978CPX.bed.gz 3.1 MB 01b8c510c03e0323c26e4b8c59449134
ENCFF978CPX.tabix.bed.gz 2.82 MB 422bb42365e7889e870fb9b4824c79c9
ENCFF978CPX.tabix.bed.gz.tbi 811.27 KB f6e53d28f5d4693d2eadb0f98b33217d
genomic_resource.yaml 1.33 KB 2f4bd4eb42bdc31fd05acf879f46042b
statistics/