Resource
| Id | DNase-seq/ENCSR751VMX |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR751VMX [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with mild cognitive impairment output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF211LAD|/files/ENCFF211LAD/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.28. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR751VMX | float |
DNase-seq_ENCSR751VMX |
DNase-seq ENCSR751VMX [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
|
 |
[0.0396, 9.06] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 33541082 | 1.04% | 167589 |
| chr1 | 2949836 | 1.18% | 14483 |
| chr2 | 2753871 | 1.14% | 13710 |
| chr3 | 1410727 | 0.71% | 7068 |
| chr4 | 978144 | 0.51% | 4827 |
| chr5 | 1432097 | 0.79% | 7199 |
| chr6 | 1053795 | 0.62% | 5360 |
| chr7 | 2038911 | 1.28% | 10134 |
| chr8 | 1343931 | 0.93% | 6590 |
| chr9 | 1498544 | 1.08% | 7406 |
| chr10 | 2017329 | 1.51% | 10015 |
| chr11 | 1842600 | 1.36% | 8953 |
| chr12 | 1251253 | 0.94% | 6445 |
| chr13 | 485599 | 0.42% | 2492 |
| chr14 | 1191799 | 1.11% | 5929 |
| chr15 | 1257520 | 1.23% | 6419 |
| chr16 | 1851634 | 2.05% | 9413 |
| chr17 | 2000187 | 2.40% | 10103 |
| chr18 | 494650 | 0.62% | 2487 |
| chr19 | 1230194 | 2.10% | 6297 |
| chr20 | 1323869 | 2.05% | 6652 |
| chr21 | 647649 | 1.39% | 3185 |
| chr22 | 1508819 | 2.97% | 7305 |
| chrX | 973988 | 0.62% | 5084 |
| chrY | 4136 | 0.01% | 33 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 167589 | 1 | 1300 | 200.14 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF026BCO.bed.gz | 1.52 MB | 524be5fe0ddf43d662b9e4ed58685b4c |
| ENCFF026BCO.tabix.bed.gz | 1.45 MB | b620188932b88c8f715d4b69f63b1c16 |
| ENCFF026BCO.tabix.bed.gz.tbi | 201.92 KB | 992ee82ce16fe3c03a9524acef579dfc |
| genomic_resource.yaml | 2.3 KB | 5f13a55deef9a7c1455ad78b477e9301 |
| statistics/ |